Wall clock time and date at job start Mon Mar 30 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46420 * 2 1 4 4 C 1.53045 * 109.45796 * 240.03941 * 2 1 3 5 5 C 1.53127 * 109.27578 * 180.80204 * 4 2 1 6 6 C 1.53091 * 109.15511 * 57.65482 * 5 4 2 7 7 H 1.08993 * 109.48888 * 182.39814 * 6 5 4 8 8 O 1.42906 * 109.50893 * 62.28306 * 6 5 4 9 9 C 1.53041 * 109.29206 * 302.33884 * 6 5 4 10 10 N 1.46838 * 109.46605 * 119.98625 * 2 1 3 11 11 C 1.46898 * 111.00113 * 305.85048 * 10 2 1 12 12 C 1.53002 * 109.47263 * 164.84110 * 11 10 2 13 13 C 1.50698 * 109.47049 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00236 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47124 * 120.00044 * 17 15 13 20 20 H 1.48500 * 109.47413 * 240.00177 * 17 15 13 21 21 H 1.09010 * 109.46558 * 307.25864 * 1 2 3 22 22 H 1.08994 * 109.47594 * 67.25118 * 1 2 3 23 23 H 1.09000 * 109.47066 * 187.25987 * 1 2 3 24 24 H 1.08993 * 109.50344 * 300.74086 * 4 2 1 25 25 H 1.09002 * 109.50010 * 60.82433 * 4 2 1 26 26 H 1.09002 * 109.51712 * 177.55794 * 5 4 2 27 27 H 1.09003 * 109.51947 * 297.74628 * 5 4 2 28 28 H 0.96700 * 113.99208 * 60.18183 * 8 6 5 29 29 H 1.09009 * 109.45791 * 299.17638 * 9 6 5 30 30 H 1.09000 * 109.46369 * 179.19894 * 9 6 5 31 31 H 1.08996 * 109.47058 * 284.84420 * 11 10 2 32 32 H 1.08999 * 109.46653 * 44.84467 * 11 10 2 33 33 H 1.08996 * 109.47336 * 300.00139 * 12 11 10 34 34 H 1.08999 * 109.46994 * 60.00565 * 12 11 10 35 35 H 0.96996 * 120.00243 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5709 -0.7358 -1.2359 6 6 4.0546 -1.4187 0.0460 7 1 5.1437 -1.3946 0.0822 8 8 3.6058 -2.7753 0.0626 9 6 3.4866 -0.6779 1.2588 10 7 2.0193 -0.6919 1.1991 11 6 1.4375 -0.1110 2.4165 12 6 1.6559 -1.0657 3.5919 13 6 1.0584 -0.4700 4.8406 14 1 0.5712 0.4931 4.7998 15 6 1.1337 -1.1544 6.0351 16 7 1.7265 -2.3273 6.0848 17 14 0.3938 -0.4157 7.5831 18 1 -0.2114 0.9020 7.2624 19 1 -0.6536 -1.3249 8.1137 20 1 1.4575 -0.2371 8.6038 21 1 -0.3633 0.6222 0.8180 22 1 -0.3634 0.3974 -0.9476 23 1 -0.3633 -1.0194 0.1299 24 1 1.6658 -1.7444 -1.2580 25 1 1.6887 -0.1981 -2.1400 26 1 3.9378 -1.2859 -2.1025 27 1 3.9456 0.2874 -1.2674 28 1 3.9284 -3.3053 -0.6792 29 1 3.8404 0.3531 1.2530 30 1 3.8177 -1.1705 2.1730 31 1 1.9187 0.8435 2.6293 32 1 0.3689 0.0456 2.2693 33 1 1.1747 -2.0202 3.3791 34 1 2.7245 -1.2223 3.7391 35 1 1.7798 -2.8086 6.9252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306984101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:58 Heat of formation + Delta-G solvation = -84.866407 kcal Electronic energy + Delta-G solvation = -14948.331634 eV Core-core repulsion = 12558.619963 eV Total energy + Delta-G solvation = -2389.711671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52845 -37.36152 -35.52629 -33.93640 -32.49230 -30.98091 -27.83043 -26.63365 -24.70004 -22.51088 -21.79689 -20.58326 -18.58237 -17.75756 -16.93579 -16.57730 -16.30396 -15.52752 -15.11700 -14.92759 -14.49835 -14.15483 -13.91993 -13.67810 -13.13796 -12.94461 -12.81456 -12.63537 -12.48480 -12.38680 -12.11640 -11.89050 -11.54848 -11.34187 -11.30519 -10.87867 -10.63003 -10.50484 -9.04110 -8.19802 -6.32425 1.38643 1.40055 1.53350 2.39669 3.04047 3.12622 3.46993 3.86445 3.88055 4.06205 4.16965 4.38146 4.44886 4.45736 4.58372 4.66133 4.77238 4.84888 4.92370 4.95048 5.02228 5.08687 5.11227 5.25474 5.33151 5.46224 5.51999 5.67109 5.81228 6.13585 6.37502 6.46070 6.85728 7.10724 7.36860 8.92712 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044098 B = 0.007422 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.792890 B = 3771.465369 C = 4162.089491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.035 0.965 4 C -0.101 4.101 5 C -0.144 4.144 6 C 0.110 3.890 7 H 0.072 0.928 8 O -0.572 6.572 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.074 3.926 12 C 0.042 3.958 13 C -0.545 4.545 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.047 0.953 22 H 0.084 0.916 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.385 0.615 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.071 0.929 33 H -0.015 1.015 34 H -0.014 1.014 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 4.836 -16.098 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 H 0.053 0.947 4 C -0.139 4.139 5 C -0.182 4.182 6 C 0.051 3.949 7 H 0.090 0.910 8 O -0.379 6.379 9 C -0.072 4.072 10 N -0.263 5.263 11 C -0.054 4.054 12 C 0.005 3.995 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.103 0.897 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.233 0.767 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.003 0.997 34 H 0.004 0.996 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.605 4.428 -15.490 16.320 hybrid contribution 0.336 0.599 0.844 1.088 sum 2.942 5.027 -14.646 15.762 Atomic orbital electron populations 1.21884 0.94198 1.01785 1.02195 1.21781 0.95942 0.95030 0.90711 0.94678 1.21517 0.95467 1.01029 0.95858 1.22262 0.96418 1.01931 0.97589 1.21854 0.96692 0.82259 0.94111 0.90983 1.86728 1.76804 1.22047 1.52299 1.22123 0.88415 0.98070 0.98590 1.61882 1.06625 1.55646 1.02159 1.22070 0.98971 0.94930 0.89388 1.18842 0.94538 0.94054 0.92065 1.21674 1.37050 1.04985 0.94632 0.92116 1.26034 0.95717 0.95223 1.02930 1.70148 1.44768 1.14988 1.27363 0.85333 0.78167 0.78758 0.78353 1.18427 1.20242 1.20217 0.93445 0.89681 0.93274 0.92044 0.89395 0.88948 0.90427 0.76702 0.93416 0.93385 0.96664 0.91038 0.99680 0.99580 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.57 71.98 0.62 -3.46 16 2 C 0.07 2.20 2.44 44.94 0.11 2.31 16 3 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.10 -2.38 5.22 30.65 0.16 -2.22 16 5 C -0.14 -2.93 5.70 30.67 0.17 -2.76 16 6 C 0.11 3.00 3.80 30.64 0.12 3.12 16 7 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 8 O -0.57 -17.62 12.65 -148.98 -1.88 -19.50 16 9 C 0.06 2.05 4.99 86.33 0.43 2.48 16 10 N -0.54 -21.18 4.34 -871.09 -3.78 -24.95 16 11 C 0.07 3.38 4.70 86.30 0.41 3.79 16 12 C 0.04 2.45 5.01 29.85 0.15 2.60 16 13 C -0.54 -32.73 9.11 25.60 0.23 -32.50 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -59.56 13.29 21.45 0.28 -59.27 16 17 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H 0.05 1.43 6.45 -2.38 -0.02 1.42 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.65 7.80 -2.39 -0.02 1.63 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.38 7.47 9.08 -74.06 -0.67 6.80 16 29 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.05 2.12 6.45 -2.39 -0.02 2.11 16 31 H 0.02 0.69 8.07 -2.39 -0.02 0.67 16 32 H 0.07 3.18 5.58 -2.39 -0.01 3.17 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H -0.01 -0.88 6.62 -2.39 -0.02 -0.90 16 35 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -72.84 275.50 -0.11 -72.95 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.38 Total: 9.24 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 2.86 Total: -26.25 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.49 Total: -84.23 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.88 Total: -19.50 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.84 -0.11 -72.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306984101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.917 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds