Wall clock time and date at job start Mon Mar 30 2020 04:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.67178 * 2 1 4 4 C 1.54889 * 110.75489 * 236.77174 * 2 1 3 5 5 C 1.54267 * 104.19693 * 203.55470 * 4 2 1 6 6 C 1.53883 * 106.59596 * 23.61004 * 5 4 2 7 7 C 1.52995 * 110.02933 * 119.33393 * 6 5 4 8 8 O 1.42903 * 109.47521 * 67.09711 * 7 6 5 9 9 N 1.46503 * 110.02916 * 240.71524 * 6 5 4 10 10 C 1.46505 * 119.99709 * 232.07325 * 9 6 5 11 11 C 1.36937 * 120.00233 * 52.08128 * 9 6 5 12 12 H 1.08002 * 119.99612 * 24.16797 * 11 9 6 13 13 C 1.38810 * 119.99709 * 204.17540 * 11 9 6 14 14 N 1.31614 * 120.00163 * 12.86910 * 13 11 9 15 15 Si 1.86806 * 119.99604 * 192.86886 * 13 11 9 16 16 H 1.48499 * 109.47067 * 90.00104 * 15 13 11 17 17 H 1.48492 * 109.46933 * 209.99948 * 15 13 11 18 18 H 1.48501 * 109.47271 * 330.00230 * 15 13 11 19 19 C 1.54265 * 106.59559 * 0.02562 * 6 5 4 20 20 H 1.09002 * 109.47030 * 181.77403 * 1 2 3 21 21 H 1.08998 * 109.47341 * 301.77442 * 1 2 3 22 22 H 1.08997 * 109.47570 * 61.77887 * 1 2 3 23 23 H 1.09000 * 110.48796 * 84.88183 * 4 2 1 24 24 H 1.08993 * 110.48803 * 322.23230 * 4 2 1 25 25 H 1.08996 * 110.03364 * 264.32729 * 5 4 2 26 26 H 1.08999 * 110.07893 * 142.91308 * 5 4 2 27 27 H 1.09007 * 109.46973 * 187.09211 * 7 6 5 28 28 H 1.08996 * 109.47370 * 307.09095 * 7 6 5 29 29 H 0.96699 * 113.99970 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.46342 * 84.63448 * 10 9 6 31 31 H 1.09000 * 109.47075 * 204.62965 * 10 9 6 32 32 H 1.08997 * 109.47333 * 324.63667 * 10 9 6 33 33 H 0.96998 * 119.99763 * 180.02562 * 14 13 11 34 34 H 1.08998 * 110.48559 * 95.06940 * 19 6 5 35 35 H 1.09000 * 110.48204 * 217.70969 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2116 5 6 3.4949 -1.2213 -0.7736 6 6 3.4975 -1.2223 0.7652 7 6 3.8103 -2.6259 1.2877 8 8 5.1574 -2.9685 0.9558 9 7 4.4898 -0.2680 1.2660 10 6 5.4890 -0.6976 2.2476 11 6 4.4834 1.0256 0.8167 12 1 3.5738 1.4567 0.4254 13 6 5.6460 1.7825 0.8642 14 7 6.8024 1.1986 1.0969 15 14 5.5692 3.6298 0.5978 16 1 5.3685 4.3102 1.9024 17 1 6.8404 4.0951 -0.0127 18 1 4.4377 3.9527 -0.3081 19 6 2.0827 -0.7960 1.2085 20 1 -0.3633 -1.0272 0.0318 21 1 -0.3634 0.5411 0.8736 22 1 -0.3634 0.4859 -0.9055 23 1 2.1289 -0.1562 -2.0943 24 1 1.4593 -1.6689 -1.4065 25 1 4.2319 -0.5107 -1.1477 26 1 3.7166 -2.2207 -1.1480 27 1 3.6866 -2.6464 2.3705 28 1 3.1296 -3.3439 0.8306 29 1 5.4251 -3.8477 1.2567 30 1 6.3335 -1.1535 1.7306 31 1 5.8342 0.1658 2.8163 32 1 5.0427 -1.4248 2.9259 33 1 7.6147 1.7276 1.1305 34 1 1.4642 -1.6719 1.4043 35 1 2.1354 -0.1597 2.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307630540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:02 Heat of formation + Delta-G solvation = -33.529530 kcal Electronic energy + Delta-G solvation = -15649.908350 eV Core-core repulsion = 13262.422813 eV Total energy + Delta-G solvation = -2387.485537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.76274 -35.74588 -34.12531 -31.38843 -29.61054 -28.12348 -26.15451 -25.03924 -23.30385 -21.74169 -19.38883 -18.27438 -16.70078 -16.02908 -15.85645 -14.27779 -14.11764 -13.88602 -13.09474 -13.01738 -12.61988 -12.58485 -12.04755 -11.65498 -11.52540 -10.89759 -10.81092 -10.64614 -10.31704 -10.20323 -10.13565 -10.07398 -9.92827 -9.77807 -9.54938 -9.36952 -9.16075 -8.31274 -6.46434 -5.57432 -3.00109 3.45209 3.51474 3.52634 4.59978 4.84357 5.26336 5.36049 5.48345 5.59908 5.63406 5.81130 5.90228 5.91666 6.08423 6.14313 6.21218 6.24796 6.36287 6.52092 6.58325 6.69626 6.76350 6.91434 6.96417 7.10565 7.14136 7.46124 7.64951 7.99734 8.05667 8.28412 8.60991 9.42472 10.07870 10.59212 11.48507 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.014382 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.393710 B = 1946.445742 C = 2707.413641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.123 4.123 6 C 0.201 3.799 7 C 0.084 3.916 8 O -0.547 6.547 9 N -0.582 5.582 10 C 0.173 3.827 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.002 4.002 14 N -0.904 5.904 15 Si 0.897 3.103 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.280 1.280 19 C -0.123 4.123 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.359 0.641 30 H 0.027 0.973 31 H 0.046 0.954 32 H -0.014 1.014 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 -6.512 -0.385 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.154 4.154 5 C -0.162 4.162 6 C 0.111 3.889 7 C 0.006 3.994 8 O -0.350 6.350 9 N -0.305 5.305 10 C 0.029 3.971 11 C -0.372 4.372 12 H 0.089 0.911 13 C -0.200 4.200 14 N -0.549 5.549 15 Si 0.728 3.272 16 H -0.217 1.217 17 H -0.219 1.219 18 H -0.206 1.206 19 C -0.163 4.163 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.203 0.797 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.004 0.996 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.622 -5.833 -0.627 10.429 hybrid contribution 0.073 0.451 0.067 0.462 sum -8.549 -5.382 -0.560 10.117 Atomic orbital electron populations 1.21773 0.96400 1.00793 1.00794 1.22114 0.93529 1.00419 0.95311 0.89797 1.22356 0.97134 0.98490 0.97373 1.22552 0.96180 1.00468 0.97004 1.20362 0.89571 0.86909 0.92073 1.22436 0.83110 0.96269 0.97631 1.86840 1.29077 1.36897 1.82156 1.43946 1.33775 1.06400 1.46331 1.20728 0.90634 0.95874 0.89852 1.19207 0.93962 0.87106 1.36880 0.91130 1.25038 0.95251 0.98007 1.01659 1.70100 0.97086 1.33444 1.54291 0.86363 0.76783 0.86382 0.77713 1.21729 1.21949 1.20598 1.22884 0.96759 0.98496 0.98192 0.93388 0.93224 0.93386 0.92816 0.93136 0.89981 0.93516 0.94417 0.94843 0.79715 0.95422 0.93496 0.99590 0.94063 0.93287 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.28 37.16 0.34 -1.63 16 2 C -0.10 -1.67 3.09 -88.62 -0.27 -1.94 16 3 H 0.08 1.67 6.05 -51.93 -0.31 1.36 16 4 C -0.12 -2.01 6.27 -25.07 -0.16 -2.17 16 5 C -0.12 -2.54 5.74 -25.61 -0.15 -2.69 16 6 C 0.20 4.22 0.88 -130.70 -0.12 4.11 16 7 C 0.08 1.53 4.80 37.16 0.18 1.71 16 8 O -0.55 -10.52 11.02 -35.23 -0.39 -10.91 16 9 N -0.58 -14.90 2.80 -164.91 -0.46 -15.36 16 10 C 0.17 4.49 7.34 59.85 0.44 4.93 16 11 C -0.24 -6.66 7.95 -15.06 -0.12 -6.78 16 12 H 0.07 1.90 5.33 -52.49 -0.28 1.62 16 13 C 0.00 -0.05 5.03 -17.43 -0.09 -0.13 16 14 N -0.90 -27.26 10.84 55.49 0.60 -26.66 16 15 Si 0.90 22.40 29.57 -169.99 -5.03 17.37 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.12 -2.28 5.20 -25.06 -0.13 -2.41 16 20 H 0.05 0.62 8.13 -51.93 -0.42 0.19 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.77 8.05 -51.93 -0.42 0.36 16 25 H 0.08 2.02 7.06 -51.93 -0.37 1.66 16 26 H 0.05 0.92 7.62 -51.93 -0.40 0.52 16 27 H 0.04 0.66 7.06 -51.92 -0.37 0.30 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.36 4.86 9.12 45.56 0.42 5.27 16 30 H 0.03 0.78 7.00 -51.93 -0.36 0.41 16 31 H 0.05 1.32 6.70 -51.93 -0.35 0.97 16 32 H -0.01 -0.33 6.28 -51.93 -0.33 -0.66 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 0.79 7.76 -51.93 -0.40 0.38 16 35 H 0.07 1.37 8.04 -51.93 -0.42 0.96 16 LS Contribution 266.22 15.07 4.01 4.01 Total: -1.00 -31.31 266.22 -6.16 -37.47 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.83 Total: 1.08 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.07 Total: -7.01 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.14 Total: -42.02 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.39 Total: -10.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.31 -6.16 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.941 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds