Wall clock time and date at job start Mon Mar 30 2020 04:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.67178 * 2 1 4 4 C 1.54889 * 110.75489 * 236.77174 * 2 1 3 5 5 C 1.54267 * 104.19693 * 203.55470 * 4 2 1 6 6 C 1.53883 * 106.59596 * 23.61004 * 5 4 2 7 7 C 1.52995 * 110.02933 * 119.33393 * 6 5 4 8 8 O 1.42903 * 109.47521 * 67.09711 * 7 6 5 9 9 N 1.46503 * 110.02916 * 240.71524 * 6 5 4 10 10 C 1.46505 * 119.99709 * 232.07325 * 9 6 5 11 11 C 1.36937 * 120.00233 * 52.08128 * 9 6 5 12 12 H 1.08002 * 119.99612 * 24.16797 * 11 9 6 13 13 C 1.38810 * 119.99709 * 204.17540 * 11 9 6 14 14 N 1.31614 * 120.00163 * 12.86910 * 13 11 9 15 15 Si 1.86806 * 119.99604 * 192.86886 * 13 11 9 16 16 H 1.48499 * 109.47067 * 90.00104 * 15 13 11 17 17 H 1.48492 * 109.46933 * 209.99948 * 15 13 11 18 18 H 1.48501 * 109.47271 * 330.00230 * 15 13 11 19 19 C 1.54265 * 106.59559 * 0.02562 * 6 5 4 20 20 H 1.09002 * 109.47030 * 181.77403 * 1 2 3 21 21 H 1.08998 * 109.47341 * 301.77442 * 1 2 3 22 22 H 1.08997 * 109.47570 * 61.77887 * 1 2 3 23 23 H 1.09000 * 110.48796 * 84.88183 * 4 2 1 24 24 H 1.08993 * 110.48803 * 322.23230 * 4 2 1 25 25 H 1.08996 * 110.03364 * 264.32729 * 5 4 2 26 26 H 1.08999 * 110.07893 * 142.91308 * 5 4 2 27 27 H 1.09007 * 109.46973 * 187.09211 * 7 6 5 28 28 H 1.08996 * 109.47370 * 307.09095 * 7 6 5 29 29 H 0.96699 * 113.99970 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.46342 * 84.63448 * 10 9 6 31 31 H 1.09000 * 109.47075 * 204.62965 * 10 9 6 32 32 H 1.08997 * 109.47333 * 324.63667 * 10 9 6 33 33 H 0.96998 * 119.99763 * 180.02562 * 14 13 11 34 34 H 1.08998 * 110.48559 * 95.06940 * 19 6 5 35 35 H 1.09000 * 110.48204 * 217.70969 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2116 5 6 3.4949 -1.2213 -0.7736 6 6 3.4975 -1.2223 0.7652 7 6 3.8103 -2.6259 1.2877 8 8 5.1574 -2.9685 0.9558 9 7 4.4898 -0.2680 1.2660 10 6 5.4890 -0.6976 2.2476 11 6 4.4834 1.0256 0.8167 12 1 3.5738 1.4567 0.4254 13 6 5.6460 1.7825 0.8642 14 7 6.8024 1.1986 1.0969 15 14 5.5692 3.6298 0.5978 16 1 5.3685 4.3102 1.9024 17 1 6.8404 4.0951 -0.0127 18 1 4.4377 3.9527 -0.3081 19 6 2.0827 -0.7960 1.2085 20 1 -0.3633 -1.0272 0.0318 21 1 -0.3634 0.5411 0.8736 22 1 -0.3634 0.4859 -0.9055 23 1 2.1289 -0.1562 -2.0943 24 1 1.4593 -1.6689 -1.4065 25 1 4.2319 -0.5107 -1.1477 26 1 3.7166 -2.2207 -1.1480 27 1 3.6866 -2.6464 2.3705 28 1 3.1296 -3.3439 0.8306 29 1 5.4251 -3.8477 1.2567 30 1 6.3335 -1.1535 1.7306 31 1 5.8342 0.1658 2.8163 32 1 5.0427 -1.4248 2.9259 33 1 7.6147 1.7276 1.1305 34 1 1.4642 -1.6719 1.4043 35 1 2.1354 -0.1597 2.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307630540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:02 Heat of formation + Delta-G solvation = -55.438297 kcal Electronic energy + Delta-G solvation = -15650.858386 eV Core-core repulsion = 13262.422813 eV Total energy + Delta-G solvation = -2388.435573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35230 -37.18026 -36.02778 -33.20315 -31.27176 -29.73046 -28.05303 -26.56243 -25.05878 -23.50133 -20.78890 -20.04335 -18.33264 -17.87850 -17.53098 -16.15747 -15.67215 -15.48601 -14.69646 -14.67649 -14.36318 -14.01302 -13.59538 -13.26436 -13.05771 -12.86330 -12.59591 -12.44552 -12.12003 -11.99778 -11.88285 -11.65712 -11.48848 -11.28591 -11.15971 -11.06010 -10.68490 -10.45705 -8.54032 -7.73518 -5.17117 1.44548 1.45342 1.53704 2.54758 3.34348 3.48551 3.73255 3.92855 4.05869 4.24465 4.44585 4.46353 4.59294 4.68409 4.82661 4.85032 4.87642 4.97882 5.08071 5.12782 5.17324 5.23398 5.32243 5.44146 5.45165 5.54873 5.65090 5.81520 5.87308 5.92035 6.49033 7.11362 7.27715 8.05161 8.49066 9.31528 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.014382 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.393710 B = 1946.445742 C = 2707.413641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.119 4.119 6 C 0.181 3.819 7 C 0.085 3.915 8 O -0.578 6.578 9 N -0.598 5.598 10 C 0.194 3.806 11 C -0.234 4.234 12 H 0.075 0.925 13 C -0.064 4.064 14 N -0.941 5.941 15 Si 0.957 3.043 16 H -0.288 1.288 17 H -0.300 1.300 18 H -0.269 1.269 19 C -0.115 4.115 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.383 0.617 30 H -0.002 1.002 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 -7.610 -0.645 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.068 0.932 4 C -0.144 4.144 5 C -0.159 4.159 6 C 0.093 3.907 7 C 0.007 3.993 8 O -0.384 6.384 9 N -0.320 5.320 10 C 0.049 3.951 11 C -0.365 4.365 12 H 0.093 0.907 13 C -0.258 4.258 14 N -0.590 5.590 15 Si 0.787 3.213 16 H -0.215 1.215 17 H -0.227 1.227 18 H -0.194 1.194 19 C -0.154 4.154 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.016 0.984 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.353 -6.958 -0.891 13.345 hybrid contribution 0.873 0.696 0.133 1.124 sum -10.480 -6.263 -0.758 12.232 Atomic orbital electron populations 1.21697 0.93154 1.02432 1.01640 1.22066 0.96168 0.98327 0.94873 0.93205 1.22328 0.95221 0.99711 0.97179 1.22442 0.97078 0.99535 0.96816 1.20830 0.89643 0.87875 0.92352 1.22447 0.83475 0.95162 0.98203 1.86780 1.29889 1.39133 1.82628 1.44185 1.34325 1.06907 1.46607 1.20369 0.90233 0.94716 0.89768 1.19536 0.93817 0.88342 1.34779 0.90706 1.25769 0.95158 1.01985 1.02891 1.70273 0.97439 1.34516 1.56735 0.85392 0.76563 0.81754 0.77624 1.21501 1.22675 1.19357 1.22770 0.95456 0.99583 0.97606 0.91253 0.92805 0.92302 0.92851 0.89770 0.95112 0.92621 0.93723 0.91179 0.76951 0.98380 0.96753 0.96666 0.94902 0.89696 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.28 71.98 0.67 -2.49 16 2 C -0.10 -3.11 3.09 -9.50 -0.03 -3.14 16 3 H 0.05 1.95 6.05 -2.39 -0.01 1.93 16 4 C -0.11 -3.41 6.27 31.67 0.20 -3.21 16 5 C -0.12 -4.81 5.74 31.32 0.18 -4.63 16 6 C 0.18 7.35 0.88 4.33 0.00 7.35 16 7 C 0.08 2.86 4.80 71.98 0.35 3.20 16 8 O -0.58 -21.41 11.02 -148.98 -1.64 -23.05 16 9 N -0.60 -30.85 2.80 -675.66 -1.89 -32.74 16 10 C 0.19 10.24 7.34 127.77 0.94 11.18 16 11 C -0.23 -13.15 7.95 84.03 0.67 -12.49 16 12 H 0.08 4.08 5.33 -2.91 -0.02 4.07 16 13 C -0.06 -3.77 5.03 84.86 0.43 -3.34 16 14 N -0.94 -59.06 10.84 21.65 0.23 -58.82 16 15 Si 0.96 47.27 29.57 68.60 2.03 49.30 16 16 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 17 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 C -0.11 -3.93 5.20 31.68 0.16 -3.76 16 20 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 21 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 25 H 0.03 1.53 7.06 -2.39 -0.02 1.51 16 26 H 0.06 2.09 7.62 -2.39 -0.02 2.07 16 27 H 0.04 1.43 7.06 -2.38 -0.02 1.41 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.38 9.62 9.12 -74.06 -0.68 8.95 16 30 H 0.00 -0.12 7.00 -2.38 -0.02 -0.14 16 31 H 0.01 0.81 6.70 -2.39 -0.02 0.79 16 32 H 0.02 0.69 6.28 -2.39 -0.02 0.68 16 33 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.08 2.31 7.76 -2.39 -0.02 2.30 16 35 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 Total: -1.00 -69.80 266.22 2.69 -67.11 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.39 Total: 9.53 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 3.56 Total: -11.33 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -1.66 Total: -91.57 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.64 Total: -23.05 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -69.80 2.69 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.674 kcal (2) G-P(sol) polarization free energy of solvation -69.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds