Wall clock time and date at job start Mon Mar 30 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.01703 * 2 1 4 4 C 1.53873 * 110.07125 * 121.42258 * 2 1 3 5 5 C 1.54266 * 106.59943 * 119.30883 * 4 2 1 6 6 C 1.54886 * 104.19576 * 23.60246 * 5 4 2 7 7 C 1.53002 * 110.91789 * 203.67048 * 6 5 4 8 8 O 1.42907 * 109.47213 * 295.95860 * 7 6 5 9 9 N 1.46509 * 110.75415 * 80.37783 * 6 5 4 10 10 C 1.46495 * 119.99782 * 243.24925 * 9 6 5 11 11 C 1.36938 * 119.99875 * 63.24434 * 9 6 5 12 12 H 1.07996 * 120.00308 * 1.93567 * 11 9 6 13 13 C 1.38811 * 119.99521 * 181.92885 * 11 9 6 14 14 N 1.31614 * 120.00502 * 353.06810 * 13 11 9 15 15 Si 1.86798 * 119.99794 * 173.07021 * 13 11 9 16 16 H 1.48499 * 109.47313 * 89.99839 * 15 13 11 17 17 H 1.48498 * 109.47446 * 209.99850 * 15 13 11 18 18 H 1.48506 * 109.47294 * 330.00019 * 15 13 11 19 19 C 1.54269 * 110.02968 * 238.61258 * 2 1 3 20 20 H 1.09004 * 109.46855 * 181.38616 * 1 2 3 21 21 H 1.08995 * 109.47073 * 301.38712 * 1 2 3 22 22 H 1.08998 * 109.47289 * 61.38979 * 1 2 3 23 23 H 1.08997 * 110.02688 * 238.58945 * 4 2 1 24 24 H 1.08993 * 110.03464 * 359.97191 * 4 2 1 25 25 H 1.09007 * 110.48170 * 264.92913 * 5 4 2 26 26 H 1.09003 * 110.48983 * 142.28581 * 5 4 2 27 27 H 1.08999 * 109.46790 * 55.95185 * 7 6 5 28 28 H 1.08995 * 109.47629 * 175.95903 * 7 6 5 29 29 H 0.96694 * 113.99786 * 179.97438 * 8 7 6 30 30 H 1.09003 * 109.46924 * 245.71748 * 10 9 6 31 31 H 1.09002 * 109.47442 * 125.72008 * 10 9 6 32 32 H 1.09001 * 109.47138 * 5.71890 * 10 9 6 33 33 H 0.96999 * 120.00454 * 179.97438 * 14 13 11 34 34 H 1.09002 * 110.48688 * 98.37947 * 19 2 1 35 35 H 1.08999 * 110.60367 * 335.78783 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0581 -0.7535 1.2333 5 6 2.8891 -1.9399 0.7025 6 6 3.3143 -1.4994 -0.7202 7 6 3.6247 -2.7136 -1.5980 8 8 4.7506 -3.4126 -1.0634 9 7 4.4661 -0.5959 -0.6614 10 6 4.3393 0.7843 -1.1359 11 6 5.6611 -1.0415 -0.1628 12 1 5.7635 -2.0676 0.1580 13 6 6.7410 -0.1742 -0.0700 14 7 6.6606 1.0345 -0.5847 15 14 8.3084 -0.7225 0.7856 16 1 9.2181 -1.3531 -0.2044 17 1 8.9784 0.4549 1.3937 18 1 7.9748 -1.7055 1.8476 19 6 2.0584 -0.7549 -1.2373 20 1 -0.3633 -1.0274 0.0249 21 1 -0.3633 0.5352 0.8772 22 1 -0.3634 0.4921 -0.9022 23 1 2.6875 -0.0950 1.8319 24 1 1.2245 -1.1191 1.8327 25 1 2.2793 -2.8422 0.6562 26 1 3.7658 -2.1025 1.3296 27 1 2.7607 -3.3778 -1.6180 28 1 3.8510 -2.3812 -2.6111 29 1 5.0042 -4.1959 -1.5704 30 1 4.9696 0.9260 -2.0139 31 1 4.6536 1.4696 -0.3487 32 1 3.3004 0.9843 -1.3983 33 1 7.4150 1.6406 -0.5195 34 1 2.3289 -0.0526 -2.0259 35 1 1.3156 -1.4657 -1.5991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307630542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:05 Heat of formation + Delta-G solvation = -20.626195 kcal Electronic energy + Delta-G solvation = -15680.592762 eV Core-core repulsion = 13293.666756 eV Total energy + Delta-G solvation = -2386.926007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86809 -35.61875 -34.12252 -31.30327 -29.60861 -28.23747 -26.54965 -24.68327 -23.10700 -22.18538 -19.14132 -18.29638 -16.66397 -16.14620 -15.68779 -14.31186 -14.26272 -13.87157 -13.21395 -13.01598 -12.68203 -12.30255 -12.06657 -11.73144 -11.49033 -11.19546 -10.65001 -10.55403 -10.41701 -10.24607 -10.13629 -10.01475 -9.76541 -9.70851 -9.62045 -9.35280 -8.92150 -8.26754 -6.67245 -5.38733 -2.77572 3.53196 3.58601 3.61627 4.67947 4.88600 5.22085 5.24816 5.45289 5.57918 5.72453 5.78203 5.89717 6.00685 6.02676 6.13907 6.17022 6.19102 6.34040 6.37345 6.42197 6.57474 6.66113 6.87639 6.89375 6.99206 7.04527 7.25428 7.81208 8.06112 8.21316 8.44246 8.64509 9.55344 10.16977 10.58733 11.61836 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.011706 C = 0.010400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.910206 B = 2391.395758 C = 2691.728049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.124 4.124 6 C 0.203 3.797 7 C 0.078 3.922 8 O -0.542 6.542 9 N -0.589 5.589 10 C 0.158 3.842 11 C -0.206 4.206 12 H 0.094 0.906 13 C -0.022 4.022 14 N -0.931 5.931 15 Si 0.905 3.095 16 H -0.294 1.294 17 H -0.296 1.296 18 H -0.284 1.284 19 C -0.123 4.123 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.352 0.648 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.004 0.996 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -4.648 -0.858 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.164 4.164 6 C 0.112 3.888 7 C -0.002 4.002 8 O -0.345 6.345 9 N -0.311 5.311 10 C 0.014 3.986 11 C -0.335 4.335 12 H 0.112 0.888 13 C -0.215 4.215 14 N -0.582 5.582 15 Si 0.737 3.263 16 H -0.222 1.222 17 H -0.222 1.222 18 H -0.210 1.210 19 C -0.160 4.160 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.196 0.804 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.386 -4.000 -0.395 11.137 hybrid contribution 1.012 -0.680 -0.077 1.222 sum -9.374 -4.680 -0.472 10.488 Atomic orbital electron populations 1.21887 0.96090 1.01030 1.00820 1.21678 0.94052 1.00014 0.95231 0.90941 1.22050 0.98175 0.97657 0.96727 1.22692 0.98930 0.95643 0.99095 1.20548 0.87246 0.88503 0.92464 1.22740 0.86801 0.93634 0.97046 1.86843 1.49804 1.43010 1.54795 1.43952 1.06535 1.07904 1.72742 1.21286 0.93144 0.84889 0.99279 1.19646 0.87077 0.95700 1.31124 0.88834 1.24825 0.98166 0.96484 1.02061 1.70235 1.29910 1.07145 1.50863 0.86199 0.83871 0.76848 0.79393 1.22177 1.22220 1.20985 1.22689 0.96349 0.99039 0.97951 0.93111 0.93267 0.93273 0.92061 0.93344 0.93633 0.90874 0.95832 0.94829 0.80405 0.95512 0.93047 0.97732 0.94599 0.90662 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.84 37.16 0.33 -1.51 16 2 C -0.09 -1.50 2.99 -89.50 -0.27 -1.77 16 3 H 0.07 1.29 7.02 -51.93 -0.36 0.93 16 4 C -0.11 -1.91 6.44 -25.61 -0.16 -2.08 16 5 C -0.12 -2.41 5.67 -25.07 -0.14 -2.55 16 6 C 0.20 4.17 0.75 -129.82 -0.10 4.08 16 7 C 0.08 1.48 6.14 37.16 0.23 1.71 16 8 O -0.54 -10.83 10.55 -35.23 -0.37 -11.20 16 9 N -0.59 -14.90 2.88 -163.96 -0.47 -15.37 16 10 C 0.16 4.01 8.12 59.84 0.49 4.49 16 11 C -0.21 -5.81 8.10 -15.06 -0.12 -5.94 16 12 H 0.09 2.66 5.73 -52.49 -0.30 2.36 16 13 C -0.02 -0.64 5.43 -17.43 -0.09 -0.74 16 14 N -0.93 -28.14 9.46 55.49 0.53 -27.62 16 15 Si 0.90 23.35 29.56 -169.99 -5.02 18.32 16 16 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 17 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 19 C -0.12 -2.12 4.78 -25.07 -0.12 -2.24 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.74 7.67 -51.93 -0.40 0.34 16 25 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 26 H 0.07 1.64 7.32 -51.93 -0.38 1.26 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.35 5.18 9.12 45.56 0.42 5.60 16 30 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 31 H 0.05 1.44 6.73 -51.93 -0.35 1.09 16 32 H 0.00 0.10 3.88 -51.93 -0.20 -0.10 16 33 H 0.24 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 35 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -31.48 264.78 -6.08 -37.56 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.76 Total: 0.86 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.03 Total: -6.55 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.05 Total: -42.99 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.37 Total: -11.20 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.48 -6.08 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.936 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds