Wall clock time and date at job start Mon Mar 30 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.43250 * 2 1 4 4 C 1.54889 * 110.48096 * 122.53844 * 2 1 3 5 5 C 1.54894 * 102.74836 * 156.75694 * 4 2 1 6 6 C 1.54268 * 104.19132 * 322.05318 * 5 4 2 7 7 C 1.53007 * 110.02942 * 142.94609 * 6 5 4 8 8 O 1.42895 * 109.47194 * 67.09303 * 7 6 5 9 9 N 1.46500 * 110.03420 * 264.32526 * 6 5 4 10 10 C 1.46503 * 119.99716 * 130.19114 * 9 6 5 11 11 C 1.36932 * 119.99883 * 310.19362 * 9 6 5 12 12 H 1.07990 * 120.00320 * 337.80310 * 11 9 6 13 13 C 1.38814 * 119.99715 * 157.80285 * 11 9 6 14 14 N 1.31622 * 120.00223 * 343.37306 * 13 11 9 15 15 Si 1.86802 * 119.99804 * 163.36715 * 13 11 9 16 16 H 1.48507 * 109.47075 * 265.45543 * 15 13 11 17 17 H 1.48498 * 109.46986 * 145.45505 * 15 13 11 18 18 H 1.48495 * 109.47010 * 25.45528 * 15 13 11 19 19 C 1.53879 * 106.59958 * 23.61176 * 6 5 4 20 20 H 1.08996 * 109.47657 * 298.91955 * 1 2 3 21 21 H 1.09003 * 109.46710 * 58.91297 * 1 2 3 22 22 H 1.08994 * 109.47510 * 178.91320 * 1 2 3 23 23 H 1.08994 * 110.76033 * 38.44040 * 4 2 1 24 24 H 1.09010 * 110.75619 * 275.06644 * 4 2 1 25 25 H 1.08994 * 110.48312 * 203.38002 * 5 4 2 26 26 H 1.09002 * 110.60195 * 80.78690 * 5 4 2 27 27 H 1.08996 * 109.46665 * 187.09412 * 7 6 5 28 28 H 1.08998 * 109.46653 * 307.09221 * 7 6 5 29 29 H 0.96700 * 113.99920 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47256 * 275.30724 * 10 9 6 31 31 H 1.08996 * 109.47277 * 35.30913 * 10 9 6 32 32 H 1.09001 * 109.46549 * 155.30803 * 10 9 6 33 33 H 0.96999 * 119.99874 * 180.02562 * 14 13 11 34 34 H 1.09009 * 110.03008 * 119.28035 * 19 6 5 35 35 H 1.08997 * 110.03153 * 240.70988 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4920 -1.1940 0.7630 6 6 3.3202 -1.5377 -0.7311 7 6 4.5509 -1.0829 -1.5182 8 8 5.6815 -1.8648 -1.1281 9 7 3.1250 -2.9803 -0.8950 10 6 2.0120 -3.4815 -1.7051 11 6 3.9829 -3.8603 -0.2910 12 1 4.9741 -3.5393 -0.0070 13 6 3.5783 -5.1649 -0.0437 14 7 2.2996 -5.4752 -0.0782 15 14 4.8487 -6.4803 0.3378 16 1 5.2116 -7.1953 -0.9121 17 1 4.2834 -7.4459 1.3142 18 1 6.0607 -5.8453 0.9146 19 6 2.0727 -0.7785 -1.2162 20 1 -0.3634 0.4969 0.8995 21 1 -0.3633 0.5306 -0.8801 22 1 -0.3634 -1.0274 -0.0195 23 1 1.4593 -1.6595 1.4230 24 1 2.1228 -0.1360 2.1010 25 1 3.8336 -2.0673 1.3185 26 1 4.1912 -0.3670 0.8863 27 1 4.3688 -1.2143 -2.5848 28 1 4.7471 -0.0312 -1.3099 29 1 6.4992 -1.6309 -1.5884 30 1 1.1107 -3.5299 -1.0940 31 1 1.8444 -2.8101 -2.5472 32 1 2.2529 -4.4774 -2.0769 33 1 2.0170 -6.3868 0.0950 34 1 2.3438 -0.0852 -2.0126 35 1 1.3222 -1.4834 -1.5736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307630543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:07 Heat of formation + Delta-G solvation = -30.601179 kcal Electronic energy + Delta-G solvation = -15647.131173 eV Core-core repulsion = 13259.772619 eV Total energy + Delta-G solvation = -2387.358554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.77119 -35.55202 -34.22420 -31.31867 -29.76099 -28.21734 -26.32812 -24.73892 -23.12715 -22.06826 -19.55674 -18.02949 -16.72202 -16.02743 -15.21749 -15.03697 -13.93743 -13.57531 -13.30835 -13.18098 -12.69869 -12.42098 -11.95366 -11.69722 -11.58701 -10.93774 -10.76246 -10.50021 -10.39455 -10.27934 -10.11705 -10.06039 -9.95427 -9.75345 -9.56058 -9.50046 -9.01947 -8.24821 -6.51222 -5.54327 -2.91393 3.51087 3.57600 3.60598 4.66796 4.93327 5.20959 5.30166 5.41138 5.61737 5.66079 5.85300 5.95351 5.96410 6.09570 6.12921 6.17698 6.21190 6.37442 6.43313 6.51158 6.64729 6.65694 6.82699 6.90683 7.00503 7.10236 7.36161 7.48342 7.78904 8.19144 8.43315 8.66657 9.47796 10.10428 10.59754 11.54281 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032443 B = 0.011991 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.843832 B = 2334.496812 C = 2692.152080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.200 3.800 7 C 0.074 3.926 8 O -0.540 6.540 9 N -0.581 5.581 10 C 0.160 3.840 11 C -0.218 4.218 12 H 0.087 0.913 13 C -0.013 4.013 14 N -0.916 5.916 15 Si 0.899 3.101 16 H -0.293 1.293 17 H -0.296 1.296 18 H -0.280 1.280 19 C -0.128 4.128 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.024 0.976 29 H 0.350 0.650 30 H 0.015 0.985 31 H -0.006 1.006 32 H 0.057 0.943 33 H 0.247 0.753 34 H 0.051 0.949 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 10.665 -1.898 10.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.158 4.158 6 C 0.110 3.890 7 C -0.006 4.006 8 O -0.342 6.342 9 N -0.303 5.303 10 C 0.015 3.985 11 C -0.348 4.348 12 H 0.104 0.896 13 C -0.209 4.209 14 N -0.563 5.563 15 Si 0.731 3.269 16 H -0.221 1.221 17 H -0.223 1.223 18 H -0.206 1.206 19 C -0.166 4.166 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.194 0.806 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.531 10.206 -1.481 10.327 hybrid contribution 1.015 -0.505 -0.242 1.159 sum 0.484 9.702 -1.723 9.865 Atomic orbital electron populations 1.21785 0.95667 1.01916 1.00483 1.21906 0.94910 0.98312 0.96088 0.91916 1.22486 0.97718 0.99108 0.95791 1.22649 0.94959 1.00572 0.97653 1.20287 0.90035 0.85918 0.92790 1.22990 0.88383 0.91753 0.97503 1.86882 1.18368 1.61935 1.67037 1.43999 1.31912 0.98496 1.55892 1.20766 0.90421 0.96487 0.90796 1.19480 0.93834 0.90417 1.31023 0.89580 1.24969 0.95478 0.98826 1.01632 1.70102 1.12823 1.18033 1.55378 0.86285 0.81214 0.82097 0.77340 1.22078 1.22336 1.20562 1.22650 0.98389 0.98665 0.96896 0.93323 0.93426 0.92313 0.91109 0.93183 0.89793 0.93703 0.95329 0.95817 0.80618 0.96672 0.98782 0.92450 0.94284 0.92993 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.13 37.16 0.34 -1.68 16 2 C -0.09 -1.50 3.45 -88.96 -0.31 -1.80 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -2.06 6.33 -24.74 -0.16 -2.22 16 5 C -0.12 -2.44 5.77 -25.07 -0.14 -2.58 16 6 C 0.20 4.17 0.90 -130.69 -0.12 4.05 16 7 C 0.07 1.40 5.80 37.16 0.22 1.61 16 8 O -0.54 -10.77 10.78 -35.23 -0.38 -11.15 16 9 N -0.58 -14.72 2.88 -164.91 -0.47 -15.20 16 10 C 0.16 4.01 7.50 59.85 0.45 4.46 16 11 C -0.22 -6.11 7.37 -15.06 -0.11 -6.22 16 12 H 0.09 2.46 6.01 -52.49 -0.32 2.15 16 13 C -0.01 -0.38 4.95 -17.43 -0.09 -0.46 16 14 N -0.92 -27.46 10.94 55.49 0.61 -26.86 16 15 Si 0.90 22.98 29.59 -169.99 -5.03 17.95 16 16 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 C -0.13 -2.30 5.27 -25.61 -0.13 -2.44 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 23 H 0.07 1.46 8.06 -51.93 -0.42 1.05 16 24 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.08 2.01 6.69 -51.93 -0.35 1.67 16 26 H 0.04 0.83 7.77 -51.93 -0.40 0.43 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 29 H 0.35 5.09 9.12 45.56 0.42 5.51 16 30 H 0.02 0.40 7.81 -51.93 -0.41 -0.01 16 31 H -0.01 -0.14 6.67 -51.93 -0.35 -0.48 16 32 H 0.06 1.58 6.68 -51.93 -0.35 1.24 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.05 0.82 7.67 -51.92 -0.40 0.43 16 35 H 0.09 1.67 4.75 -51.93 -0.25 1.43 16 LS Contribution 268.37 15.07 4.04 4.04 Total: -1.00 -31.19 268.37 -6.19 -37.37 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.90 Total: 1.11 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.05 Total: -7.28 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.13 Total: -42.06 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.38 Total: -11.15 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.19 -6.19 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.773 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds