Wall clock time and date at job start Mon Mar 30 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.43250 * 2 1 4 4 C 1.54889 * 110.48096 * 122.53844 * 2 1 3 5 5 C 1.54894 * 102.74836 * 156.75694 * 4 2 1 6 6 C 1.54268 * 104.19132 * 322.05318 * 5 4 2 7 7 C 1.53007 * 110.02942 * 142.94609 * 6 5 4 8 8 O 1.42895 * 109.47194 * 67.09303 * 7 6 5 9 9 N 1.46500 * 110.03420 * 264.32526 * 6 5 4 10 10 C 1.46503 * 119.99716 * 130.19114 * 9 6 5 11 11 C 1.36932 * 119.99883 * 310.19362 * 9 6 5 12 12 H 1.07990 * 120.00320 * 337.80310 * 11 9 6 13 13 C 1.38814 * 119.99715 * 157.80285 * 11 9 6 14 14 N 1.31622 * 120.00223 * 343.37306 * 13 11 9 15 15 Si 1.86802 * 119.99804 * 163.36715 * 13 11 9 16 16 H 1.48507 * 109.47075 * 265.45543 * 15 13 11 17 17 H 1.48498 * 109.46986 * 145.45505 * 15 13 11 18 18 H 1.48495 * 109.47010 * 25.45528 * 15 13 11 19 19 C 1.53879 * 106.59958 * 23.61176 * 6 5 4 20 20 H 1.08996 * 109.47657 * 298.91955 * 1 2 3 21 21 H 1.09003 * 109.46710 * 58.91297 * 1 2 3 22 22 H 1.08994 * 109.47510 * 178.91320 * 1 2 3 23 23 H 1.08994 * 110.76033 * 38.44040 * 4 2 1 24 24 H 1.09010 * 110.75619 * 275.06644 * 4 2 1 25 25 H 1.08994 * 110.48312 * 203.38002 * 5 4 2 26 26 H 1.09002 * 110.60195 * 80.78690 * 5 4 2 27 27 H 1.08996 * 109.46665 * 187.09412 * 7 6 5 28 28 H 1.08998 * 109.46653 * 307.09221 * 7 6 5 29 29 H 0.96700 * 113.99920 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47256 * 275.30724 * 10 9 6 31 31 H 1.08996 * 109.47277 * 35.30913 * 10 9 6 32 32 H 1.09001 * 109.46549 * 155.30803 * 10 9 6 33 33 H 0.96999 * 119.99874 * 180.02562 * 14 13 11 34 34 H 1.09009 * 110.03008 * 119.28035 * 19 6 5 35 35 H 1.08997 * 110.03153 * 240.70988 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4920 -1.1940 0.7630 6 6 3.3202 -1.5377 -0.7311 7 6 4.5509 -1.0829 -1.5182 8 8 5.6815 -1.8648 -1.1281 9 7 3.1250 -2.9803 -0.8950 10 6 2.0120 -3.4815 -1.7051 11 6 3.9829 -3.8603 -0.2910 12 1 4.9741 -3.5393 -0.0070 13 6 3.5783 -5.1649 -0.0437 14 7 2.2996 -5.4752 -0.0782 15 14 4.8487 -6.4803 0.3378 16 1 5.2116 -7.1953 -0.9121 17 1 4.2834 -7.4459 1.3142 18 1 6.0607 -5.8453 0.9146 19 6 2.0727 -0.7785 -1.2162 20 1 -0.3634 0.4969 0.8995 21 1 -0.3633 0.5306 -0.8801 22 1 -0.3634 -1.0274 -0.0195 23 1 1.4593 -1.6595 1.4230 24 1 2.1228 -0.1360 2.1010 25 1 3.8336 -2.0673 1.3185 26 1 4.1912 -0.3670 0.8863 27 1 4.3688 -1.2143 -2.5848 28 1 4.7471 -0.0312 -1.3099 29 1 6.4992 -1.6309 -1.5884 30 1 1.1107 -3.5299 -1.0940 31 1 1.8444 -2.8101 -2.5472 32 1 2.2529 -4.4774 -2.0769 33 1 2.0170 -6.3868 0.0950 34 1 2.3438 -0.0852 -2.0126 35 1 1.3222 -1.4834 -1.5736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307630543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:07 Heat of formation + Delta-G solvation = -52.259269 kcal Electronic energy + Delta-G solvation = -15648.070338 eV Core-core repulsion = 13259.772619 eV Total energy + Delta-G solvation = -2388.297720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33921 -37.01189 -36.11086 -33.14741 -31.41663 -29.86907 -28.10610 -26.37396 -24.83682 -23.81872 -21.01453 -19.69608 -18.42073 -17.88498 -16.90359 -16.59998 -15.86816 -15.15312 -15.03125 -14.67298 -14.23325 -13.98399 -13.68997 -13.27547 -13.13674 -12.82443 -12.75327 -12.28446 -12.19198 -11.96295 -11.73127 -11.57241 -11.42276 -11.36733 -11.32407 -11.21033 -10.55340 -10.38867 -8.57359 -7.71698 -5.09452 1.45836 1.46758 1.56468 2.59318 3.37723 3.54427 3.67664 3.93496 4.03644 4.15313 4.45916 4.54328 4.65994 4.68181 4.76057 4.81522 4.87049 4.87467 4.95875 5.03183 5.18114 5.23882 5.26591 5.40445 5.46425 5.48798 5.60388 5.73701 5.75535 5.97045 6.55700 7.16587 7.34946 8.06541 8.48684 9.35181 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032443 B = 0.011991 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.843832 B = 2334.496812 C = 2692.152080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.095 0.905 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.181 3.819 7 C 0.077 3.923 8 O -0.571 6.571 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.207 4.207 12 H 0.081 0.919 13 C -0.073 4.073 14 N -0.948 5.948 15 Si 0.956 3.044 16 H -0.293 1.293 17 H -0.301 1.301 18 H -0.273 1.273 19 C -0.127 4.127 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.374 0.626 30 H -0.010 1.010 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.240 0.760 34 H 0.082 0.918 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 13.290 -2.419 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.113 0.887 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.093 3.907 7 C -0.003 4.003 8 O -0.377 6.377 9 N -0.318 5.318 10 C 0.033 3.967 11 C -0.338 4.338 12 H 0.098 0.902 13 C -0.265 4.265 14 N -0.598 5.598 15 Si 0.787 3.213 16 H -0.221 1.221 17 H -0.229 1.229 18 H -0.198 1.198 19 C -0.164 4.164 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.008 0.992 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.162 12.874 -2.014 13.032 hybrid contribution 0.862 -1.218 -0.080 1.494 sum 1.024 11.656 -2.094 11.887 Atomic orbital electron populations 1.21748 0.94505 1.00864 1.02404 1.21912 0.95886 0.99034 0.93445 0.88707 1.22441 0.95834 0.98477 0.98155 1.22583 0.96688 0.99486 0.96848 1.20764 0.92658 0.83555 0.93687 1.22885 0.87074 0.93273 0.97035 1.86789 1.19893 1.62987 1.67987 1.44210 1.31296 1.00497 1.55758 1.20471 0.89455 0.95545 0.91270 1.19634 0.93969 0.90925 1.29243 0.90167 1.25628 0.96973 1.00797 1.03117 1.70252 1.14263 1.17715 1.57580 0.85376 0.79405 0.79749 0.76813 1.22088 1.22877 1.19770 1.22639 0.96428 0.98729 0.98628 0.91655 0.91268 0.94897 0.94949 0.90689 0.94392 0.91255 0.94983 0.92189 0.77867 0.99165 0.95504 0.95774 0.95083 0.89964 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.13 71.98 0.66 -2.91 16 2 C -0.08 -2.41 3.45 -9.72 -0.03 -2.44 16 3 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.11 -3.89 6.33 31.89 0.20 -3.68 16 5 C -0.12 -4.63 5.77 31.67 0.18 -4.45 16 6 C 0.18 7.27 0.90 4.33 0.00 7.27 16 7 C 0.08 2.65 5.80 71.98 0.42 3.07 16 8 O -0.57 -21.56 10.78 -148.98 -1.61 -23.17 16 9 N -0.60 -30.32 2.88 -675.67 -1.95 -32.27 16 10 C 0.18 9.07 7.50 127.77 0.96 10.03 16 11 C -0.21 -11.78 7.37 84.03 0.62 -11.16 16 12 H 0.08 4.63 6.01 -2.92 -0.02 4.61 16 13 C -0.07 -4.30 4.95 84.86 0.42 -3.88 16 14 N -0.95 -59.03 10.94 21.65 0.24 -58.79 16 15 Si 0.96 48.42 29.59 68.60 2.03 50.45 16 16 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 17 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 18 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 19 C -0.13 -4.18 5.27 31.32 0.17 -4.02 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.03 1.00 8.11 -2.39 -0.02 0.98 16 23 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 24 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 25 H 0.04 1.83 6.69 -2.39 -0.02 1.82 16 26 H 0.07 2.37 7.77 -2.39 -0.02 2.35 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 29 H 0.37 9.91 9.12 -74.06 -0.68 9.24 16 30 H -0.01 -0.55 7.81 -2.38 -0.02 -0.57 16 31 H 0.03 1.17 6.67 -2.39 -0.02 1.15 16 32 H 0.02 1.35 6.68 -2.39 -0.02 1.34 16 33 H 0.24 14.67 8.31 -92.71 -0.77 13.89 16 34 H 0.08 2.22 7.67 -2.38 -0.02 2.21 16 35 H 0.07 2.48 4.75 -2.39 -0.01 2.47 16 Total: -1.00 -69.11 268.37 2.70 -66.41 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.39 Total: 9.54 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.59 Total: -12.17 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -1.71 Total: -91.06 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -1.61 Total: -23.17 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -69.11 2.70 -66.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.154 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds