Wall clock time and date at job start Mon Mar 30 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.01841 * 2 1 4 4 C 1.54268 * 110.02881 * 238.61079 * 2 1 3 5 5 C 1.54894 * 104.19328 * 217.10862 * 4 2 1 6 6 C 1.54884 * 102.74798 * 37.94434 * 5 4 2 7 7 C 1.53008 * 110.48660 * 203.24742 * 6 5 4 8 8 O 1.42898 * 109.46815 * 296.76146 * 7 6 5 9 9 N 1.46498 * 110.48917 * 80.73597 * 6 5 4 10 10 C 1.46499 * 120.00190 * 179.00802 * 9 6 5 11 11 C 1.36940 * 120.00050 * 359.01076 * 9 6 5 12 12 H 1.08002 * 119.99391 * 353.12876 * 11 9 6 13 13 C 1.38804 * 120.00037 * 173.40638 * 11 9 6 14 14 N 1.31625 * 120.00388 * 9.24420 * 13 11 9 15 15 Si 1.86801 * 119.99717 * 189.24744 * 13 11 9 16 16 H 1.48502 * 109.47333 * 90.00320 * 15 13 11 17 17 H 1.48506 * 109.46880 * 209.99598 * 15 13 11 18 18 H 1.48500 * 109.47349 * 329.99851 * 15 13 11 19 19 C 1.53878 * 110.03043 * 121.44614 * 2 1 3 20 20 H 1.09001 * 109.47481 * 184.69967 * 1 2 3 21 21 H 1.08999 * 109.46818 * 304.70439 * 1 2 3 22 22 H 1.09005 * 109.46722 * 64.69874 * 1 2 3 23 23 H 1.09000 * 110.48848 * 98.43186 * 4 2 1 24 24 H 1.09001 * 110.59909 * 335.83937 * 4 2 1 25 25 H 1.09003 * 110.75224 * 279.62755 * 5 4 2 26 26 H 1.08998 * 110.91553 * 156.33303 * 5 4 2 27 27 H 1.08997 * 109.46779 * 56.75699 * 7 6 5 28 28 H 1.08997 * 109.47116 * 176.75538 * 7 6 5 29 29 H 0.96700 * 114.00048 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47120 * 241.37155 * 10 9 6 31 31 H 1.09004 * 109.47108 * 1.36997 * 10 9 6 32 32 H 1.08995 * 109.47228 * 121.37022 * 10 9 6 33 33 H 0.96997 * 120.00049 * 179.97438 * 14 13 11 34 34 H 1.08997 * 110.02928 * 0.02562 * 19 2 1 35 35 H 1.08997 * 110.03270 * 238.56767 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7549 -1.2373 5 6 3.3136 -1.5005 -0.7198 6 6 2.8874 -1.9411 0.7025 7 6 4.1174 -2.1737 1.5823 8 8 4.8915 -3.2476 1.0443 9 7 2.0670 -3.1532 0.6396 10 6 1.5676 -3.7647 1.8737 11 6 1.7670 -3.7148 -0.5728 12 1 2.0393 -3.2060 -1.4857 13 6 1.1078 -4.9351 -0.6284 14 7 0.6103 -5.4650 0.4689 15 14 0.9269 -5.8253 -2.2606 16 1 2.0899 -6.7258 -2.4650 17 1 -0.3237 -6.6262 -2.2516 18 1 0.8705 -4.8317 -3.3629 19 6 2.0571 -0.7542 1.2334 20 1 -0.3634 -1.0242 0.0842 21 1 -0.3633 0.5851 0.8448 22 1 -0.3633 0.4392 -0.9291 23 1 2.3297 -0.0527 -2.0255 24 1 1.3151 -1.4651 -1.5995 25 1 4.1710 -0.8288 -0.6756 26 1 3.5356 -2.3672 -1.3424 27 1 4.7222 -1.2672 1.6081 28 1 3.7984 -2.4265 2.5934 29 1 5.6885 -3.4512 1.5527 30 1 1.9670 -4.7747 1.9661 31 1 1.8856 -3.1685 2.7290 32 1 0.4789 -3.8058 1.8441 33 1 0.1493 -6.3175 0.4300 34 1 1.2229 -1.1206 1.8316 35 1 2.6867 -0.0964 1.8324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307630545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:09 Heat of formation + Delta-G solvation = -23.838331 kcal Electronic energy + Delta-G solvation = -15757.995043 eV Core-core repulsion = 13370.929747 eV Total energy + Delta-G solvation = -2387.065295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.81508 -35.63246 -34.16090 -31.30088 -29.63013 -28.46718 -25.63198 -25.26800 -23.16038 -21.99745 -19.36948 -18.19170 -16.59881 -16.29425 -15.55076 -14.91867 -13.96525 -13.54327 -13.12899 -12.93447 -12.58663 -12.31932 -12.07159 -11.73618 -11.37097 -11.05892 -10.65678 -10.44254 -10.39094 -10.25676 -10.09801 -10.01433 -9.91866 -9.78391 -9.56775 -9.44412 -9.02595 -8.31491 -6.69233 -5.46687 -2.83249 3.49704 3.55491 3.56391 4.63121 4.86649 5.30087 5.34800 5.46412 5.58344 5.74244 5.85113 5.95674 6.06181 6.12271 6.14278 6.21434 6.26479 6.45417 6.50632 6.68263 6.72174 6.76582 6.82567 6.88670 7.01801 7.08519 7.27425 7.80719 7.90918 8.09980 8.33636 8.56455 9.46665 10.11483 10.54697 11.54664 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.013974 C = 0.011816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.092634 B = 2003.257552 C = 2369.072712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.054 0.946 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.204 3.796 7 C 0.072 3.928 8 O -0.548 6.548 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.226 4.226 12 H 0.084 0.916 13 C -0.011 4.011 14 N -0.922 5.922 15 Si 0.899 3.101 16 H -0.291 1.291 17 H -0.295 1.295 18 H -0.283 1.283 19 C -0.130 4.130 20 H 0.067 0.933 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.034 0.966 29 H 0.357 0.643 30 H 0.040 0.960 31 H -0.015 1.015 32 H 0.040 0.960 33 H 0.245 0.755 34 H 0.068 0.932 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 9.344 1.543 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.113 3.887 7 C -0.009 4.009 8 O -0.349 6.349 9 N -0.307 5.307 10 C 0.032 3.968 11 C -0.355 4.355 12 H 0.101 0.899 13 C -0.206 4.206 14 N -0.571 5.571 15 Si 0.730 3.270 16 H -0.219 1.219 17 H -0.222 1.222 18 H -0.209 1.209 19 C -0.170 4.170 20 H 0.086 0.914 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.201 0.799 30 H 0.058 0.942 31 H 0.003 0.997 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.707 9.178 1.098 9.960 hybrid contribution 0.343 -0.546 -0.267 0.698 sum 4.050 8.632 0.832 9.571 Atomic orbital electron populations 1.21847 0.95526 1.02520 0.99873 1.21542 0.95453 0.97613 0.95607 0.92737 1.22504 0.98577 0.98479 0.96058 1.22540 0.95872 0.99452 0.96991 1.20391 0.87959 0.87315 0.93009 1.22809 0.93302 0.87819 0.96927 1.86737 1.39114 1.54474 1.54613 1.43787 1.57014 1.26126 1.03739 1.20929 0.98063 0.94556 0.83246 1.19435 1.30267 1.00348 0.85448 0.89882 1.24811 1.01206 0.97915 0.96646 1.70219 1.42233 1.19370 1.25278 0.86310 0.76893 0.80102 0.83694 1.21890 1.22152 1.20883 1.22773 0.99919 0.97132 0.97156 0.91392 0.93947 0.93729 0.93564 0.89895 0.93201 0.89928 0.95427 0.94796 0.79898 0.94200 0.99655 0.94105 0.94375 0.91320 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.84 37.16 0.33 -1.98 16 2 C -0.08 -1.41 3.50 -89.50 -0.31 -1.73 16 3 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -2.17 5.90 -25.07 -0.15 -2.32 16 5 C -0.11 -2.18 5.09 -24.74 -0.13 -2.30 16 6 C 0.20 4.21 0.59 -130.16 -0.08 4.14 16 7 C 0.07 1.33 5.65 37.16 0.21 1.54 16 8 O -0.55 -10.81 13.30 -35.23 -0.47 -11.27 16 9 N -0.58 -14.67 2.73 -164.33 -0.45 -15.11 16 10 C 0.18 4.53 7.86 59.85 0.47 5.00 16 11 C -0.23 -6.19 8.22 -15.06 -0.12 -6.31 16 12 H 0.08 2.21 4.43 -52.49 -0.23 1.98 16 13 C -0.01 -0.31 5.44 -17.43 -0.09 -0.41 16 14 N -0.92 -27.46 9.49 55.49 0.53 -26.94 16 15 Si 0.90 22.72 29.56 -169.99 -5.03 17.70 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 C -0.13 -2.36 5.62 -25.61 -0.14 -2.50 16 20 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.73 6.11 -51.93 -0.32 1.41 16 25 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 26 H 0.08 1.83 6.26 -51.93 -0.33 1.51 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.63 6.99 -51.93 -0.36 0.26 16 29 H 0.36 5.06 9.12 45.56 0.42 5.48 16 30 H 0.04 1.13 7.01 -51.93 -0.36 0.77 16 31 H -0.02 -0.35 6.69 -51.93 -0.35 -0.69 16 32 H 0.04 1.13 7.10 -51.93 -0.37 0.77 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 1.35 6.86 -51.93 -0.36 0.99 16 35 H 0.05 0.74 7.84 -51.93 -0.41 0.34 16 LS Contribution 266.74 15.07 4.02 4.02 Total: -1.00 -30.88 266.74 -6.17 -37.05 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.76 Total: 1.43 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.02 Total: -6.87 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.08 Total: -42.05 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.47 Total: -11.27 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.88 -6.17 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.216 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds