Wall clock time and date at job start Mon Mar 30 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.01841 * 2 1 4 4 C 1.54268 * 110.02881 * 238.61079 * 2 1 3 5 5 C 1.54894 * 104.19328 * 217.10862 * 4 2 1 6 6 C 1.54884 * 102.74798 * 37.94434 * 5 4 2 7 7 C 1.53008 * 110.48660 * 203.24742 * 6 5 4 8 8 O 1.42898 * 109.46815 * 296.76146 * 7 6 5 9 9 N 1.46498 * 110.48917 * 80.73597 * 6 5 4 10 10 C 1.46499 * 120.00190 * 179.00802 * 9 6 5 11 11 C 1.36940 * 120.00050 * 359.01076 * 9 6 5 12 12 H 1.08002 * 119.99391 * 353.12876 * 11 9 6 13 13 C 1.38804 * 120.00037 * 173.40638 * 11 9 6 14 14 N 1.31625 * 120.00388 * 9.24420 * 13 11 9 15 15 Si 1.86801 * 119.99717 * 189.24744 * 13 11 9 16 16 H 1.48502 * 109.47333 * 90.00320 * 15 13 11 17 17 H 1.48506 * 109.46880 * 209.99598 * 15 13 11 18 18 H 1.48500 * 109.47349 * 329.99851 * 15 13 11 19 19 C 1.53878 * 110.03043 * 121.44614 * 2 1 3 20 20 H 1.09001 * 109.47481 * 184.69967 * 1 2 3 21 21 H 1.08999 * 109.46818 * 304.70439 * 1 2 3 22 22 H 1.09005 * 109.46722 * 64.69874 * 1 2 3 23 23 H 1.09000 * 110.48848 * 98.43186 * 4 2 1 24 24 H 1.09001 * 110.59909 * 335.83937 * 4 2 1 25 25 H 1.09003 * 110.75224 * 279.62755 * 5 4 2 26 26 H 1.08998 * 110.91553 * 156.33303 * 5 4 2 27 27 H 1.08997 * 109.46779 * 56.75699 * 7 6 5 28 28 H 1.08997 * 109.47116 * 176.75538 * 7 6 5 29 29 H 0.96700 * 114.00048 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47120 * 241.37155 * 10 9 6 31 31 H 1.09004 * 109.47108 * 1.36997 * 10 9 6 32 32 H 1.08995 * 109.47228 * 121.37022 * 10 9 6 33 33 H 0.96997 * 120.00049 * 179.97438 * 14 13 11 34 34 H 1.08997 * 110.02928 * 0.02562 * 19 2 1 35 35 H 1.08997 * 110.03270 * 238.56767 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7549 -1.2373 5 6 3.3136 -1.5005 -0.7198 6 6 2.8874 -1.9411 0.7025 7 6 4.1174 -2.1737 1.5823 8 8 4.8915 -3.2476 1.0443 9 7 2.0670 -3.1532 0.6396 10 6 1.5676 -3.7647 1.8737 11 6 1.7670 -3.7148 -0.5728 12 1 2.0393 -3.2060 -1.4857 13 6 1.1078 -4.9351 -0.6284 14 7 0.6103 -5.4650 0.4689 15 14 0.9269 -5.8253 -2.2606 16 1 2.0899 -6.7258 -2.4650 17 1 -0.3237 -6.6262 -2.2516 18 1 0.8705 -4.8317 -3.3629 19 6 2.0571 -0.7542 1.2334 20 1 -0.3634 -1.0242 0.0842 21 1 -0.3633 0.5851 0.8448 22 1 -0.3633 0.4392 -0.9291 23 1 2.3297 -0.0527 -2.0255 24 1 1.3151 -1.4651 -1.5995 25 1 4.1710 -0.8288 -0.6756 26 1 3.5356 -2.3672 -1.3424 27 1 4.7222 -1.2672 1.6081 28 1 3.7984 -2.4265 2.5934 29 1 5.6885 -3.4512 1.5527 30 1 1.9670 -4.7747 1.9661 31 1 1.8856 -3.1685 2.7290 32 1 0.4789 -3.8058 1.8441 33 1 0.1493 -6.3175 0.4300 34 1 1.2229 -1.1206 1.8316 35 1 2.6867 -0.0964 1.8324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307630545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:09 Heat of formation + Delta-G solvation = -45.421822 kcal Electronic energy + Delta-G solvation = -15758.930973 eV Core-core repulsion = 13370.929747 eV Total energy + Delta-G solvation = -2388.001226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38687 -37.08985 -36.05596 -33.11125 -31.28402 -30.16789 -27.59965 -26.72656 -24.90639 -23.73743 -20.83919 -19.89322 -18.31555 -18.03563 -17.31706 -16.38430 -15.86929 -15.03890 -14.86478 -14.68035 -14.15055 -13.86159 -13.76802 -13.42410 -12.98191 -12.89147 -12.68599 -12.29258 -12.22666 -11.95778 -11.67625 -11.54703 -11.48905 -11.33116 -11.23896 -11.07452 -10.61095 -10.45760 -8.73673 -7.62500 -4.98235 1.44982 1.48057 1.54080 2.57805 3.43215 3.48230 3.68796 3.93583 4.09196 4.17474 4.42683 4.50515 4.64840 4.72827 4.74242 4.82947 4.86005 4.91384 5.02247 5.09056 5.25240 5.25929 5.28516 5.41175 5.46880 5.55022 5.67281 5.79810 5.84245 5.94765 6.44223 7.12806 7.32331 8.09309 8.46304 9.38033 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.013974 C = 0.011816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.092634 B = 2003.257552 C = 2369.072712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 H 0.090 0.910 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.183 3.817 7 C 0.073 3.927 8 O -0.578 6.578 9 N -0.596 5.596 10 C 0.198 3.802 11 C -0.214 4.214 12 H 0.089 0.911 13 C -0.076 4.076 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.296 1.296 17 H -0.301 1.301 18 H -0.269 1.269 19 C -0.125 4.125 20 H 0.025 0.975 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.381 0.619 30 H 0.004 0.996 31 H 0.014 0.986 32 H 0.009 0.991 33 H 0.236 0.764 34 H 0.047 0.953 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 11.999 1.284 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.155 4.155 5 C -0.145 4.145 6 C 0.095 3.905 7 C -0.006 4.006 8 O -0.384 6.384 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.344 4.344 12 H 0.107 0.893 13 C -0.267 4.267 14 N -0.606 5.606 15 Si 0.785 3.215 16 H -0.224 1.224 17 H -0.228 1.228 18 H -0.194 1.194 19 C -0.165 4.165 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.228 0.772 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.083 11.879 0.837 12.948 hybrid contribution 0.002 -1.279 -0.168 1.290 sum 5.085 10.600 0.669 11.776 Atomic orbital electron populations 1.21781 0.95693 1.00320 1.01514 1.21595 0.95331 0.98997 0.94002 0.89151 1.22458 0.97080 0.98339 0.97587 1.22512 0.97508 0.98899 0.95626 1.20888 0.88635 0.86207 0.94782 1.22765 0.92842 0.89151 0.95841 1.86673 1.40618 1.55220 1.55877 1.43971 1.57747 1.27570 1.02561 1.20476 0.95914 0.93406 0.84891 1.19781 1.28001 0.99856 0.86745 0.89307 1.25506 1.02573 0.99288 0.99360 1.70422 1.43952 1.19337 1.26851 0.85407 0.76067 0.79007 0.81057 1.22397 1.22824 1.19438 1.22700 0.99298 0.96597 0.97863 0.95546 0.92063 0.92289 0.90756 0.93490 0.90121 0.93269 0.91464 0.95044 0.77233 0.97737 0.96780 0.97239 0.95417 0.93435 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.84 71.98 0.64 -3.57 16 2 C -0.08 -2.44 3.50 -10.07 -0.04 -2.48 16 3 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.12 -3.98 5.90 31.67 0.19 -3.79 16 5 C -0.11 -3.95 5.09 31.89 0.16 -3.79 16 6 C 0.18 7.19 0.59 4.68 0.00 7.19 16 7 C 0.07 2.51 5.65 71.98 0.41 2.91 16 8 O -0.58 -21.71 13.30 -148.98 -1.98 -23.70 16 9 N -0.60 -30.03 2.73 -673.83 -1.84 -31.87 16 10 C 0.20 10.42 7.86 127.77 1.00 11.42 16 11 C -0.21 -11.88 8.22 84.03 0.69 -11.19 16 12 H 0.09 4.77 4.43 -2.91 -0.01 4.76 16 13 C -0.08 -4.47 5.44 84.86 0.46 -4.01 16 14 N -0.95 -59.19 9.49 21.65 0.21 -58.99 16 15 Si 0.95 47.96 29.56 68.60 2.03 49.99 16 16 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 17 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 19 C -0.13 -4.15 5.62 31.32 0.18 -3.97 16 20 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 1.93 6.11 -2.39 -0.01 1.91 16 25 H 0.08 2.45 8.06 -2.39 -0.02 2.43 16 26 H 0.05 2.13 6.26 -2.39 -0.01 2.11 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.03 1.08 6.99 -2.39 -0.02 1.06 16 29 H 0.38 9.94 9.12 -74.06 -0.68 9.26 16 30 H 0.00 0.25 7.01 -2.39 -0.02 0.23 16 31 H 0.01 0.63 6.69 -2.38 -0.02 0.62 16 32 H 0.01 0.53 7.10 -2.39 -0.02 0.52 16 33 H 0.24 14.47 8.31 -92.71 -0.77 13.69 16 34 H 0.05 1.78 6.86 -2.39 -0.02 1.76 16 35 H 0.08 2.15 7.84 -2.39 -0.02 2.13 16 Total: -1.00 -68.54 266.74 2.50 -66.04 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.40 Total: 9.79 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 3.69 Total: -11.27 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -1.63 Total: -90.86 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -1.98 Total: -23.70 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -68.54 2.50 -66.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307630545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.618 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds