Wall clock time and date at job start Mon Mar 30 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46962 * 2 1 4 4 N 1.46904 * 109.47083 * 119.99613 * 2 1 3 5 5 C 1.46901 * 110.99861 * 307.77976 * 4 2 1 6 6 C 1.50702 * 109.47246 * 285.51277 * 5 4 2 7 7 H 1.08004 * 119.99572 * 357.07406 * 6 5 4 8 8 C 1.37873 * 120.00314 * 177.07712 * 6 5 4 9 9 N 1.31517 * 119.99648 * 359.72563 * 8 6 5 10 10 Si 1.86794 * 120.00339 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47081 * 60.00080 * 10 8 6 12 12 H 1.48500 * 109.47143 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47409 * 300.00122 * 10 8 6 14 14 C 1.46896 * 110.99834 * 71.73396 * 4 2 1 15 15 H 1.08998 * 115.55223 * 17.21133 * 14 4 2 16 16 C 1.53001 * 117.49719 * 231.50341 * 14 4 2 17 17 C 1.52999 * 60.00004 * 252.50818 * 16 14 4 18 18 H 1.08997 * 117.50418 * 252.50996 * 17 16 14 19 19 C 1.53005 * 117.49316 * 107.48863 * 17 16 14 20 20 O 1.42896 * 109.46841 * 114.35638 * 19 17 16 21 21 H 1.09001 * 109.47066 * 300.00171 * 1 2 3 22 22 H 1.09004 * 109.46787 * 60.00599 * 1 2 3 23 23 H 1.09005 * 109.46564 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47800 * 239.99950 * 2 1 3 25 25 H 1.08999 * 109.46749 * 168.87541 * 3 2 1 26 26 H 1.08995 * 109.46634 * 288.87341 * 3 2 1 27 27 H 1.08999 * 109.46825 * 48.87450 * 3 2 1 28 28 H 1.09001 * 109.46559 * 165.51615 * 5 4 2 29 29 H 1.09003 * 109.47355 * 45.51265 * 5 4 2 30 30 H 0.97003 * 119.99742 * 180.02562 * 9 8 6 31 31 H 1.08998 * 117.50097 * 0.02562 * 16 14 4 32 32 H 1.09005 * 117.49429 * 145.02057 * 16 14 4 33 33 H 1.09004 * 109.46600 * 234.34930 * 19 17 16 34 34 H 1.08998 * 109.47498 * 354.35328 * 19 17 16 35 35 H 0.96697 * 114.00128 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4030 -0.1418 2.4138 6 6 2.0154 1.1997 2.7242 7 1 2.8183 1.5816 2.1111 8 6 1.5508 1.9395 3.7909 9 7 0.5694 1.4768 4.5342 10 14 2.3103 3.6020 4.1761 11 1 2.1392 4.5064 3.0107 12 1 1.6376 4.1908 5.3619 13 1 3.7575 3.4309 4.4615 14 6 1.7899 -2.1401 1.1023 15 1 1.5851 -2.5174 0.1005 16 6 1.0808 -2.8229 2.2735 17 6 2.5780 -3.0457 2.0508 18 1 2.8913 -4.0189 1.6731 19 6 3.5451 -2.3742 3.0280 20 8 4.2360 -3.3753 3.7779 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.8935 -0.5138 -0.8900 25 1 3.1118 1.4490 0.1983 26 1 1.8477 1.8959 -0.9724 27 1 1.5238 2.0104 0.7741 28 1 1.5746 -0.8214 3.2486 29 1 0.3310 -0.0239 2.2556 30 1 0.2423 1.9974 5.2845 31 1 0.7844 -2.1980 3.1160 32 1 0.4091 -3.6497 2.0422 33 1 4.2658 -1.7749 2.4716 34 1 2.9863 -1.7315 3.7083 35 1 4.8671 -3.0209 4.4190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308130979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:43 Heat of formation + Delta-G solvation = -11.644555 kcal Electronic energy + Delta-G solvation = -15279.722721 eV Core-core repulsion = 12893.186188 eV Total energy + Delta-G solvation = -2386.536534 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91553 -36.27305 -34.61912 -32.59535 -29.49936 -27.40613 -26.28867 -25.92294 -22.97274 -20.68511 -19.89210 -18.35068 -16.97887 -16.50970 -15.46442 -14.67520 -14.30535 -14.05317 -13.81516 -13.11656 -12.77386 -12.53511 -12.18553 -11.80020 -11.22452 -11.09043 -11.03064 -10.89525 -10.82334 -10.45627 -10.37060 -10.24152 -10.04823 -9.67671 -9.40853 -9.00383 -8.91107 -8.35348 -7.08766 -6.03276 -4.00830 3.30880 3.36156 3.38337 4.26963 4.41371 4.71434 4.88586 5.30613 5.45951 5.57856 5.72882 5.80839 5.90679 5.95202 6.05922 6.15752 6.26613 6.31464 6.41480 6.47800 6.54091 6.66577 6.75490 6.81630 6.95278 7.26826 7.39986 7.50548 7.83810 8.12042 8.14072 8.21614 8.55435 9.04436 9.59651 11.07025 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.012329 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.091148 B = 2270.576814 C = 2931.699178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 C -0.141 4.141 4 N -0.502 5.502 5 C 0.174 3.826 6 C -0.503 4.503 7 H 0.071 0.929 8 C 0.053 3.947 9 N -0.899 5.899 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.036 3.964 15 H 0.101 0.899 16 C -0.214 4.214 17 C -0.145 4.145 18 H 0.100 0.900 19 C 0.109 3.891 20 O -0.586 6.586 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.261 0.739 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -4.376 -5.513 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.015 4.015 3 C -0.198 4.198 4 N -0.224 5.224 5 C 0.049 3.951 6 C -0.542 4.542 7 H 0.089 0.911 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.074 4.074 15 H 0.119 0.881 16 C -0.253 4.253 17 C -0.165 4.165 18 H 0.118 0.882 19 C 0.032 3.968 20 O -0.392 6.392 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.230 -4.603 -5.710 7.665 hybrid contribution -0.257 1.075 0.586 1.251 sum 1.973 -3.527 -5.123 6.526 Atomic orbital electron populations 1.22505 0.98409 1.00899 1.02376 1.21465 0.92169 0.95785 0.92095 1.22124 1.01952 0.95460 1.00296 1.62180 1.57434 0.98528 1.04224 1.20183 0.93799 0.95038 0.86042 1.21373 1.18423 1.02207 1.12199 0.91063 1.24969 0.95310 0.98168 0.96299 1.69944 1.26962 1.38397 1.18620 0.86662 0.79397 0.84253 0.77733 1.20258 1.21513 1.20290 1.22630 1.01271 0.89742 0.93753 0.88148 1.23795 0.94488 1.03625 1.03380 1.22270 0.92579 1.00028 1.01584 0.88235 1.21738 0.93781 0.88494 0.92774 1.86363 1.59443 1.37027 1.56346 0.90523 0.93617 0.93857 0.92539 0.92577 0.95178 0.89230 0.94456 0.97125 0.92970 0.86859 0.90010 0.92709 0.91847 0.78009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.48 37.16 0.32 -2.99 16 2 C 0.09 1.75 2.84 -67.70 -0.19 1.56 16 3 C -0.14 -2.70 7.72 37.16 0.29 -2.41 16 4 N -0.50 -10.31 4.19 -220.13 -0.92 -11.24 16 5 C 0.17 4.18 3.16 -4.97 -0.02 4.16 16 6 C -0.50 -13.11 6.76 -34.44 -0.23 -13.34 16 7 H 0.07 1.84 5.56 -52.48 -0.29 1.55 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 10 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.04 0.67 5.25 -67.71 -0.36 0.31 16 15 H 0.10 1.64 7.82 -51.93 -0.41 1.23 16 16 C -0.21 -3.92 9.26 -26.73 -0.25 -4.17 16 17 C -0.15 -2.62 6.06 -90.62 -0.55 -3.17 16 18 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 19 C 0.11 2.06 6.43 37.16 0.24 2.29 16 20 O -0.59 -10.09 13.66 -35.23 -0.48 -10.57 16 21 H 0.08 1.61 6.01 -51.93 -0.31 1.30 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.74 7.58 -51.93 -0.39 0.34 16 24 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 25 H 0.06 1.10 7.40 -51.93 -0.38 0.71 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 1.96 5.83 -51.93 -0.30 1.66 16 28 H 0.04 0.96 3.51 -51.93 -0.18 0.78 16 29 H 0.01 0.29 5.40 -51.93 -0.28 0.01 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.11 2.38 5.60 -51.93 -0.29 2.09 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.35 5.85 -51.93 -0.30 1.05 16 35 H 0.37 4.75 9.12 45.56 0.42 5.16 16 LS Contribution 270.03 15.07 4.07 4.07 Total: -1.00 -28.39 270.03 -6.86 -35.25 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.39 Total: 7.88 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.85 Total: -16.41 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.19 Total: -36.15 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.48 Total: -10.57 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.39 -6.86 -35.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.602 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds