Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46962 * 2 1 4 4 N 1.46904 * 109.47083 * 119.99613 * 2 1 3 5 5 C 1.46901 * 110.99861 * 307.77976 * 4 2 1 6 6 C 1.50702 * 109.47246 * 285.51277 * 5 4 2 7 7 H 1.08004 * 119.99572 * 357.07406 * 6 5 4 8 8 C 1.37873 * 120.00314 * 177.07712 * 6 5 4 9 9 N 1.31517 * 119.99648 * 359.72563 * 8 6 5 10 10 Si 1.86794 * 120.00339 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47081 * 60.00080 * 10 8 6 12 12 H 1.48500 * 109.47143 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47409 * 300.00122 * 10 8 6 14 14 C 1.46896 * 110.99834 * 71.73396 * 4 2 1 15 15 H 1.08998 * 115.55223 * 17.21133 * 14 4 2 16 16 C 1.53001 * 117.49719 * 231.50341 * 14 4 2 17 17 C 1.52999 * 60.00004 * 252.50818 * 16 14 4 18 18 H 1.08997 * 117.50418 * 252.50996 * 17 16 14 19 19 C 1.53005 * 117.49316 * 107.48863 * 17 16 14 20 20 O 1.42896 * 109.46841 * 114.35638 * 19 17 16 21 21 H 1.09001 * 109.47066 * 300.00171 * 1 2 3 22 22 H 1.09004 * 109.46787 * 60.00599 * 1 2 3 23 23 H 1.09005 * 109.46564 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47800 * 239.99950 * 2 1 3 25 25 H 1.08999 * 109.46749 * 168.87541 * 3 2 1 26 26 H 1.08995 * 109.46634 * 288.87341 * 3 2 1 27 27 H 1.08999 * 109.46825 * 48.87450 * 3 2 1 28 28 H 1.09001 * 109.46559 * 165.51615 * 5 4 2 29 29 H 1.09003 * 109.47355 * 45.51265 * 5 4 2 30 30 H 0.97003 * 119.99742 * 180.02562 * 9 8 6 31 31 H 1.08998 * 117.50097 * 0.02562 * 16 14 4 32 32 H 1.09005 * 117.49429 * 145.02057 * 16 14 4 33 33 H 1.09004 * 109.46600 * 234.34930 * 19 17 16 34 34 H 1.08998 * 109.47498 * 354.35328 * 19 17 16 35 35 H 0.96697 * 114.00128 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4030 -0.1418 2.4138 6 6 2.0154 1.1997 2.7242 7 1 2.8183 1.5816 2.1111 8 6 1.5508 1.9395 3.7909 9 7 0.5694 1.4768 4.5342 10 14 2.3103 3.6020 4.1761 11 1 2.1392 4.5064 3.0107 12 1 1.6376 4.1908 5.3619 13 1 3.7575 3.4309 4.4615 14 6 1.7899 -2.1401 1.1023 15 1 1.5851 -2.5174 0.1005 16 6 1.0808 -2.8229 2.2735 17 6 2.5780 -3.0457 2.0508 18 1 2.8913 -4.0189 1.6731 19 6 3.5451 -2.3742 3.0280 20 8 4.2360 -3.3753 3.7779 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.8935 -0.5138 -0.8900 25 1 3.1118 1.4490 0.1983 26 1 1.8477 1.8959 -0.9724 27 1 1.5238 2.0104 0.7741 28 1 1.5746 -0.8214 3.2486 29 1 0.3310 -0.0239 2.2556 30 1 0.2423 1.9974 5.2845 31 1 0.7844 -2.1980 3.1160 32 1 0.4091 -3.6497 2.0422 33 1 4.2658 -1.7749 2.4716 34 1 2.9863 -1.7315 3.7083 35 1 4.8671 -3.0209 4.4190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308130979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -32.076837 kcal Electronic energy + Delta-G solvation = -15280.608731 eV Core-core repulsion = 12893.186188 eV Total energy + Delta-G solvation = -2387.422544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.46435 -37.74443 -36.09767 -34.60202 -31.16397 -29.20525 -27.83203 -27.46451 -24.85600 -22.19670 -21.39993 -19.95044 -18.59100 -18.24723 -17.11932 -16.50248 -15.88593 -15.63969 -15.36400 -14.67616 -14.31564 -14.12085 -13.96199 -13.42612 -13.01674 -12.73936 -12.68298 -12.57240 -12.45603 -12.13633 -11.98983 -11.78657 -11.55886 -11.26594 -11.12057 -10.81440 -10.51343 -10.35119 -8.72988 -8.10219 -6.12965 1.42844 1.43447 1.50852 2.43976 2.81509 3.21985 3.27577 3.44505 3.96023 4.12008 4.25743 4.36442 4.46250 4.51134 4.59249 4.70754 4.79011 4.87308 4.90304 4.97404 5.03890 5.18405 5.21407 5.29757 5.33261 5.52234 5.65081 5.76622 5.82485 6.21801 6.50819 6.76601 6.89709 7.00258 7.51219 8.99649 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.012329 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.091148 B = 2270.576814 C = 2931.699178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 C -0.136 4.136 4 N -0.510 5.510 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.072 0.928 8 C 0.001 3.999 9 N -0.937 5.937 10 Si 0.951 3.049 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.271 1.271 14 C 0.035 3.965 15 H 0.132 0.868 16 C -0.216 4.216 17 C -0.143 4.143 18 H 0.121 0.879 19 C 0.118 3.882 20 O -0.590 6.590 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.018 0.982 29 H -0.014 1.014 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.029 0.971 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 -4.878 -7.307 9.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 C -0.193 4.193 4 N -0.232 5.232 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.090 0.910 8 C -0.196 4.196 9 N -0.579 5.579 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.217 1.217 13 H -0.196 1.196 14 C -0.075 4.075 15 H 0.150 0.850 16 C -0.255 4.255 17 C -0.162 4.162 18 H 0.139 0.861 19 C 0.041 3.959 20 O -0.398 6.398 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.003 0.997 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.086 -5.104 -7.512 9.592 hybrid contribution -0.489 1.183 1.121 1.702 sum 2.597 -3.921 -6.391 7.934 Atomic orbital electron populations 1.22374 0.97960 1.01266 1.01591 1.21637 0.92558 0.95638 0.92186 1.22003 1.00830 0.95668 1.00800 1.62071 1.57329 1.00167 1.03647 1.19790 0.92239 0.94020 0.87204 1.21690 1.17829 1.02939 1.11603 0.90989 1.25724 0.95848 1.01569 0.96459 1.70079 1.28659 1.39801 1.19335 0.85711 0.78663 0.80417 0.77525 1.19349 1.21710 1.19646 1.22824 1.01236 0.88282 0.95135 0.85024 1.23681 0.95406 1.04023 1.02344 1.22354 0.91962 1.00726 1.01182 0.86098 1.21487 0.93595 0.88490 0.92326 1.86322 1.59900 1.36712 1.56857 0.94432 0.91133 0.92930 0.89411 0.93402 0.92099 0.92684 0.96403 0.99678 0.93267 0.90415 0.87398 0.93174 0.95256 0.75828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.48 71.98 0.61 -5.38 16 2 C 0.09 3.10 2.84 44.92 0.13 3.23 16 3 C -0.14 -4.97 7.72 71.99 0.56 -4.42 16 4 N -0.51 -20.54 4.19 -850.37 -3.56 -24.11 16 5 C 0.19 9.52 3.16 85.56 0.27 9.79 16 6 C -0.50 -26.68 6.76 25.60 0.17 -26.51 16 7 H 0.07 3.74 5.56 -2.91 -0.02 3.73 16 8 C 0.00 0.05 5.46 84.65 0.46 0.52 16 9 N -0.94 -55.28 13.29 21.45 0.28 -54.99 16 10 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.04 1.21 5.25 44.92 0.24 1.45 16 15 H 0.13 3.74 7.82 -2.39 -0.02 3.72 16 16 C -0.22 -7.72 9.26 30.59 0.28 -7.44 16 17 C -0.14 -4.91 6.06 -10.79 -0.07 -4.97 16 18 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 19 C 0.12 4.42 6.43 71.98 0.46 4.89 16 20 O -0.59 -19.57 13.66 -148.98 -2.03 -21.61 16 21 H 0.04 1.59 6.01 -2.39 -0.01 1.58 16 22 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 23 H 0.05 1.69 7.58 -2.38 -0.02 1.67 16 24 H 0.09 2.61 7.93 -2.39 -0.02 2.59 16 25 H 0.05 1.80 7.40 -2.39 -0.02 1.78 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 2.40 5.83 -2.39 -0.01 2.38 16 28 H 0.02 0.97 3.51 -2.39 -0.01 0.96 16 29 H -0.01 -0.78 5.40 -2.39 -0.01 -0.79 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.08 3.39 5.60 -2.39 -0.01 3.37 16 32 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.03 1.29 5.85 -2.39 -0.01 1.28 16 35 H 0.39 9.51 9.12 -74.06 -0.68 8.84 16 Total: -1.00 -61.73 270.03 0.24 -61.49 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.41 Total: 22.47 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.12 Total: -28.85 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.28 Total: -79.10 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -2.03 Total: -21.61 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -61.73 0.24 -61.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.417 kcal (2) G-P(sol) polarization free energy of solvation -61.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds