Wall clock time and date at job start Mon Mar 30 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 N 1.46900 * 109.46790 * 119.99426 * 2 1 3 5 5 C 1.46904 * 110.99794 * 73.96058 * 4 2 1 6 6 C 1.50696 * 109.47142 * 66.75128 * 5 4 2 7 7 H 1.07995 * 120.00286 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99827 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99876 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00080 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47232 * 59.99889 * 10 8 6 12 12 H 1.48501 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47384 * 300.00080 * 10 8 6 14 14 C 1.46895 * 111.00559 * 310.00479 * 4 2 1 15 15 H 1.09008 * 115.54632 * 342.32385 * 14 4 2 16 16 C 1.53001 * 117.52165 * 128.02624 * 14 4 2 17 17 C 1.53003 * 60.00078 * 107.48377 * 16 14 4 18 18 H 1.08996 * 117.50167 * 107.48805 * 17 16 14 19 19 C 1.53002 * 117.51745 * 252.52133 * 17 16 14 20 20 O 1.42896 * 109.47063 * 242.90630 * 19 17 16 21 21 H 1.09000 * 109.47105 * 300.00234 * 1 2 3 22 22 H 1.09002 * 109.46805 * 60.00155 * 1 2 3 23 23 H 1.08995 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47420 * 239.99597 * 2 1 3 25 25 H 1.08991 * 109.47333 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46925 * 300.00047 * 3 2 1 27 27 H 1.09005 * 109.46983 * 59.99686 * 3 2 1 28 28 H 1.08997 * 109.46969 * 186.75275 * 5 4 2 29 29 H 1.09007 * 109.46848 * 306.75001 * 5 4 2 30 30 H 0.97001 * 119.99528 * 180.02562 * 9 8 6 31 31 H 1.09003 * 117.49850 * 214.96818 * 16 14 4 32 32 H 1.09004 * 117.49712 * 359.97438 * 16 14 4 33 33 H 1.08998 * 109.47041 * 2.91210 * 19 17 16 34 34 H 1.09009 * 109.46946 * 122.90538 * 19 17 16 35 35 H 0.96701 * 113.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8378 -2.1452 1.0798 6 6 2.7317 -2.6751 -0.0116 7 1 3.3706 -2.0002 -0.5617 8 6 2.7330 -4.0215 -0.3087 9 7 1.9545 -4.8434 0.3608 10 14 3.8404 -4.6783 -1.6620 11 1 5.2572 -4.3829 -1.3293 12 1 3.6567 -6.1469 -1.7829 13 1 3.4883 -4.0272 -2.9494 14 6 1.3640 -0.1777 2.4091 15 1 0.8747 0.7906 2.3027 16 6 0.7182 -1.1959 3.3509 17 6 2.0166 -0.4953 3.7560 18 1 1.9567 0.2640 4.5357 19 6 3.3022 -1.3247 3.7401 20 8 3.8333 -1.4057 5.0642 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 2.0962 -2.6228 2.0249 29 1 0.7980 -2.3623 0.8353 30 1 1.9558 -5.7907 0.1520 31 1 -0.1960 -0.8976 3.8642 32 1 0.7794 -2.2482 3.0728 33 1 3.0828 -2.3278 3.3745 34 1 4.0323 -0.8506 3.0840 35 1 4.6505 -1.9185 5.1295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308130980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:48 Heat of formation + Delta-G solvation = -21.837856 kcal Electronic energy + Delta-G solvation = -15144.089967 eV Core-core repulsion = 12757.111419 eV Total energy + Delta-G solvation = -2386.978548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.93181 -36.21871 -34.39924 -32.83924 -30.05583 -26.74796 -26.64389 -25.77622 -22.81409 -21.36435 -20.09712 -17.97321 -17.04581 -16.26001 -15.47605 -14.96494 -14.31323 -14.07470 -13.58962 -13.21165 -12.89835 -12.67181 -12.21540 -11.84004 -11.53314 -11.46113 -11.11867 -10.93025 -10.83475 -10.62759 -10.33582 -10.12439 -10.03335 -9.94095 -9.55966 -9.07889 -8.95789 -8.41985 -7.09885 -6.06071 -4.07095 3.30510 3.35200 3.37725 4.27574 4.40569 4.70104 4.88309 5.29200 5.45186 5.51297 5.64636 5.75584 5.83989 5.94655 6.00730 6.05892 6.11857 6.24761 6.29705 6.34489 6.40899 6.51804 6.60233 6.78711 6.82888 6.89885 7.34081 7.40993 7.78116 8.08839 8.11369 8.20897 8.53308 9.00593 9.56860 11.04389 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.011709 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.431145 B = 2390.783340 C = 3086.457679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 C -0.139 4.139 4 N -0.500 5.500 5 C 0.183 3.817 6 C -0.509 4.509 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.037 3.963 15 H 0.105 0.895 16 C -0.213 4.213 17 C -0.146 4.146 18 H 0.100 0.900 19 C 0.109 3.891 20 O -0.586 6.586 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.041 0.959 29 H -0.002 1.002 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 7.999 2.582 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.028 4.028 3 C -0.197 4.197 4 N -0.221 5.221 5 C 0.059 3.941 6 C -0.548 4.548 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.073 4.073 15 H 0.122 0.878 16 C -0.252 4.252 17 C -0.166 4.166 18 H 0.118 0.882 19 C 0.032 3.968 20 O -0.391 6.391 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.483 8.258 2.724 8.709 hybrid contribution 0.089 -1.010 -0.887 1.348 sum -0.393 7.247 1.837 7.487 Atomic orbital electron populations 1.22451 0.98462 1.02154 1.00562 1.21609 0.91906 0.94084 0.95158 1.21843 1.01546 0.96117 1.00160 1.62101 1.53349 1.07646 0.99045 1.20002 0.95731 0.80565 0.97807 1.21141 1.23289 0.92535 1.17833 0.92002 1.24963 0.95856 0.96944 0.96699 1.69944 1.38834 1.03844 1.41081 0.86597 0.81127 0.77624 0.82289 1.20209 1.21393 1.20293 1.22645 0.98770 0.97864 0.88057 0.87764 1.23749 0.95720 1.00668 1.05081 1.22273 0.93161 1.02112 0.99046 0.88202 1.21768 0.93733 0.99347 0.81984 1.86367 1.44846 1.77140 1.30784 0.93329 0.93388 0.92114 0.88852 0.92341 0.93378 0.93570 0.94162 0.98401 0.92859 0.89986 0.87096 0.92095 0.92546 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 8.64 37.16 0.32 -2.72 16 2 C 0.08 1.52 2.74 -67.71 -0.19 1.33 16 3 C -0.14 -2.15 9.23 37.16 0.34 -1.80 16 4 N -0.50 -10.32 4.14 -220.14 -0.91 -11.24 16 5 C 0.18 4.52 3.12 -4.98 -0.02 4.50 16 6 C -0.51 -13.76 8.32 -34.44 -0.29 -14.05 16 7 H 0.06 1.66 7.28 -52.49 -0.38 1.28 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.04 0.67 4.50 -67.71 -0.30 0.37 16 15 H 0.10 1.71 5.66 -51.92 -0.29 1.42 16 16 C -0.21 -3.92 9.26 -26.73 -0.25 -4.17 16 17 C -0.15 -2.64 6.06 -90.61 -0.55 -3.19 16 18 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 19 C 0.11 2.04 6.36 37.16 0.24 2.28 16 20 O -0.59 -10.03 13.66 -35.23 -0.48 -10.51 16 21 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 24 H 0.09 1.96 6.65 -51.93 -0.35 1.61 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.67 6.80 -51.93 -0.35 0.32 16 28 H 0.04 1.05 3.82 -51.93 -0.20 0.86 16 29 H 0.00 -0.05 6.58 -51.92 -0.34 -0.39 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.11 2.34 5.75 -51.93 -0.30 2.05 16 33 H 0.06 1.29 5.77 -51.93 -0.30 0.99 16 34 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.37 4.70 9.12 45.56 0.42 5.12 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -29.13 273.28 -6.79 -35.92 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.45 Total: 6.70 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.79 Total: -15.98 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.18 Total: -36.46 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.48 Total: -10.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.13 -6.79 -35.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.085 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds