Wall clock time and date at job start Mon Mar 30 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46992 * 2 1 4 4 N 1.46900 * 109.46790 * 119.99426 * 2 1 3 5 5 C 1.46904 * 110.99794 * 73.96058 * 4 2 1 6 6 C 1.50696 * 109.47142 * 66.75128 * 5 4 2 7 7 H 1.07995 * 120.00286 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99827 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99876 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00080 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47232 * 59.99889 * 10 8 6 12 12 H 1.48501 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47384 * 300.00080 * 10 8 6 14 14 C 1.46895 * 111.00559 * 310.00479 * 4 2 1 15 15 H 1.09008 * 115.54632 * 342.32385 * 14 4 2 16 16 C 1.53001 * 117.52165 * 128.02624 * 14 4 2 17 17 C 1.53003 * 60.00078 * 107.48377 * 16 14 4 18 18 H 1.08996 * 117.50167 * 107.48805 * 17 16 14 19 19 C 1.53002 * 117.51745 * 252.52133 * 17 16 14 20 20 O 1.42896 * 109.47063 * 242.90630 * 19 17 16 21 21 H 1.09000 * 109.47105 * 300.00234 * 1 2 3 22 22 H 1.09002 * 109.46805 * 60.00155 * 1 2 3 23 23 H 1.08995 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47420 * 239.99597 * 2 1 3 25 25 H 1.08991 * 109.47333 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46925 * 300.00047 * 3 2 1 27 27 H 1.09005 * 109.46983 * 59.99686 * 3 2 1 28 28 H 1.08997 * 109.46969 * 186.75275 * 5 4 2 29 29 H 1.09007 * 109.46848 * 306.75001 * 5 4 2 30 30 H 0.97001 * 119.99528 * 180.02562 * 9 8 6 31 31 H 1.09003 * 117.49850 * 214.96818 * 16 14 4 32 32 H 1.09004 * 117.49712 * 359.97438 * 16 14 4 33 33 H 1.08998 * 109.47041 * 2.91210 * 19 17 16 34 34 H 1.09009 * 109.46946 * 122.90538 * 19 17 16 35 35 H 0.96701 * 113.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8378 -2.1452 1.0798 6 6 2.7317 -2.6751 -0.0116 7 1 3.3706 -2.0002 -0.5617 8 6 2.7330 -4.0215 -0.3087 9 7 1.9545 -4.8434 0.3608 10 14 3.8404 -4.6783 -1.6620 11 1 5.2572 -4.3829 -1.3293 12 1 3.6567 -6.1469 -1.7829 13 1 3.4883 -4.0272 -2.9494 14 6 1.3640 -0.1777 2.4091 15 1 0.8747 0.7906 2.3027 16 6 0.7182 -1.1959 3.3509 17 6 2.0166 -0.4953 3.7560 18 1 1.9567 0.2640 4.5357 19 6 3.3022 -1.3247 3.7401 20 8 3.8333 -1.4057 5.0642 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 2.0962 -2.6228 2.0249 29 1 0.7980 -2.3623 0.8353 30 1 1.9558 -5.7907 0.1520 31 1 -0.1960 -0.8976 3.8642 32 1 0.7794 -2.2482 3.0728 33 1 3.0828 -2.3278 3.3745 34 1 4.0323 -0.8506 3.0840 35 1 4.6505 -1.9185 5.1295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308130980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:45 Heat of formation + Delta-G solvation = -43.005137 kcal Electronic energy + Delta-G solvation = -15145.007850 eV Core-core repulsion = 12757.111419 eV Total energy + Delta-G solvation = -2387.896430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48199 -37.67035 -35.86088 -34.88049 -31.77327 -28.53485 -27.98747 -27.39503 -24.69817 -22.85375 -21.66304 -19.54931 -18.52716 -18.22013 -17.03256 -16.68646 -16.12688 -15.57963 -15.16175 -14.76560 -14.39451 -14.18770 -14.00795 -13.23052 -13.18658 -13.06416 -12.69175 -12.68799 -12.51045 -12.20787 -11.92485 -11.82898 -11.62467 -11.47103 -11.17234 -10.94836 -10.58337 -10.41764 -8.75792 -8.18385 -6.26843 1.40200 1.42069 1.49947 2.39814 2.80151 3.13841 3.26911 3.42573 3.93799 4.08366 4.22655 4.33885 4.43380 4.49875 4.58934 4.63951 4.75394 4.84605 4.85690 4.93054 5.01583 5.06338 5.16078 5.29821 5.31543 5.42132 5.50756 5.59303 5.69844 6.12101 6.44775 6.72621 6.88543 6.90916 7.41951 8.91703 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.011709 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.431145 B = 2390.783340 C = 3086.457679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.074 3.926 3 C -0.128 4.128 4 N -0.507 5.507 5 C 0.204 3.796 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.037 3.963 15 H 0.135 0.865 16 C -0.216 4.216 17 C -0.143 4.143 18 H 0.123 0.877 19 C 0.118 3.882 20 O -0.589 6.589 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.026 0.974 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.022 0.978 29 H -0.033 1.033 30 H 0.262 0.738 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 9.894 2.489 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 C -0.185 4.185 4 N -0.229 5.229 5 C 0.079 3.921 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.194 1.194 14 C -0.073 4.073 15 H 0.152 0.848 16 C -0.255 4.255 17 C -0.162 4.162 18 H 0.141 0.859 19 C 0.041 3.959 20 O -0.396 6.396 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.040 0.960 29 H -0.016 1.016 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.198 10.168 2.635 10.506 hybrid contribution 0.010 -1.592 -0.814 1.788 sum -0.188 8.576 1.821 8.769 Atomic orbital electron populations 1.22348 0.97196 1.00546 1.02638 1.21693 0.93022 0.95648 0.93045 1.21744 1.01064 0.93594 1.02141 1.62011 1.54499 1.05380 1.00976 1.19578 0.93198 0.83302 0.96059 1.21473 1.23346 0.92851 1.18309 0.92283 1.25805 0.97242 0.97284 0.98994 1.70077 1.40463 1.04056 1.42743 0.85561 0.79368 0.76927 0.79532 1.19410 1.21100 1.19420 1.22809 0.98846 0.98707 0.86948 0.84781 1.23649 0.97291 0.98745 1.05779 1.22362 0.92263 1.02156 0.99430 0.85935 1.21508 0.94287 0.97559 0.82593 1.86325 1.46192 1.77600 1.29532 0.91503 0.90985 0.95513 0.91918 0.93048 0.90960 0.91961 0.96018 1.01582 0.92873 0.87261 0.90763 0.95447 0.93153 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 8.64 71.99 0.62 -4.94 16 2 C 0.07 2.71 2.74 44.92 0.12 2.83 16 3 C -0.13 -3.58 9.23 71.98 0.66 -2.92 16 4 N -0.51 -20.95 4.14 -850.38 -3.52 -24.47 16 5 C 0.20 10.48 3.12 85.56 0.27 10.74 16 6 C -0.52 -28.98 8.32 25.60 0.21 -28.76 16 7 H 0.06 3.24 7.28 -2.91 -0.02 3.22 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 10 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 C 0.04 1.28 4.50 44.92 0.20 1.48 16 15 H 0.13 3.89 5.66 -2.38 -0.01 3.88 16 16 C -0.22 -7.83 9.26 30.60 0.28 -7.54 16 17 C -0.14 -4.94 6.06 -10.79 -0.07 -5.01 16 18 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 19 C 0.12 4.43 6.36 71.98 0.46 4.89 16 20 O -0.59 -19.44 13.66 -148.98 -2.03 -21.48 16 21 H 0.07 1.93 6.32 -2.39 -0.02 1.92 16 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.03 1.04 6.74 -2.39 -0.02 1.02 16 24 H 0.06 2.66 6.65 -2.39 -0.02 2.64 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.55 6.80 -2.38 -0.02 1.53 16 28 H 0.02 1.21 3.82 -2.39 -0.01 1.20 16 29 H -0.03 -1.90 6.58 -2.38 -0.02 -1.92 16 30 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.07 3.28 5.75 -2.38 -0.01 3.27 16 33 H 0.03 1.21 5.77 -2.39 -0.01 1.20 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.39 9.45 9.12 -74.06 -0.68 8.77 16 Total: -1.00 -63.84 273.28 0.39 -63.45 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.41 Total: 20.32 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.23 Total: -28.50 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -3.24 Total: -79.87 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -2.03 Total: -21.48 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.84 0.39 -63.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.440 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds