Wall clock time and date at job start Mon Mar 30 2020 03:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46903 * 109.46976 * 120.00153 * 2 1 3 5 5 C 1.46899 * 110.99971 * 73.95477 * 4 2 1 6 6 C 1.50700 * 109.47346 * 66.04459 * 5 4 2 7 7 H 1.08001 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99795 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00091 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99580 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47363 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46522 * 120.00387 * 10 8 6 13 13 H 1.48493 * 109.46937 * 240.00058 * 10 8 6 14 14 C 1.46893 * 110.99862 * 309.99946 * 4 2 1 15 15 H 1.09008 * 115.55266 * 335.67351 * 14 4 2 16 16 C 1.53001 * 117.52026 * 121.37435 * 14 4 2 17 17 C 1.53003 * 60.00180 * 107.48013 * 16 14 4 18 18 H 1.09003 * 117.51696 * 252.52391 * 17 16 14 19 19 C 1.52999 * 117.49602 * 107.48891 * 17 16 14 20 20 O 1.42905 * 109.46728 * 116.38172 * 19 17 16 21 21 H 1.08996 * 109.47340 * 300.00002 * 1 2 3 22 22 H 1.09006 * 109.47239 * 60.00195 * 1 2 3 23 23 H 1.09003 * 109.47380 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46964 * 240.00133 * 2 1 3 25 25 H 1.08996 * 109.47175 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46857 * 300.00039 * 3 2 1 27 27 H 1.08996 * 109.46968 * 59.99770 * 3 2 1 28 28 H 1.09002 * 109.47025 * 186.04550 * 5 4 2 29 29 H 1.09004 * 109.47298 * 306.04012 * 5 4 2 30 30 H 0.97006 * 119.99894 * 179.97438 * 9 8 6 31 31 H 1.08996 * 117.49707 * 359.97438 * 16 14 4 32 32 H 1.09001 * 117.49914 * 214.97322 * 16 14 4 33 33 H 1.09000 * 109.47486 * 356.38110 * 19 17 16 34 34 H 1.09001 * 109.47362 * 236.37388 * 19 17 16 35 35 H 0.96696 * 114.00036 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8377 -2.1453 1.0797 6 6 2.7186 -2.6726 -0.0235 7 1 3.3507 -1.9963 -0.5798 8 6 2.7183 -4.0187 -0.3220 9 7 1.9489 -4.8423 0.3557 10 14 3.8097 -4.6723 -1.6900 11 1 4.5719 -3.5501 -2.2940 12 1 4.7574 -5.6706 -1.1327 13 1 2.9677 -5.3158 -2.7301 14 6 1.3640 -0.1778 2.4090 15 1 0.9733 0.8372 2.3363 16 6 0.5850 -1.1746 3.2695 17 6 1.9251 -0.6236 3.7608 18 1 2.7807 -1.2989 3.7526 19 6 1.8948 0.3894 4.9070 20 8 2.5605 -0.1600 6.0460 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 2.1081 -2.6241 2.0208 29 1 0.7952 -2.3631 0.8477 30 1 1.9485 -5.7893 0.1454 31 1 0.5585 -2.2126 2.9379 32 1 -0.3182 -0.8154 3.7628 33 1 0.8602 0.6155 5.1649 34 1 2.4003 1.3040 4.5970 35 1 2.5800 0.4293 6.8123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308130982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:57 Heat of formation + Delta-G solvation = -24.708227 kcal Electronic energy + Delta-G solvation = -14863.378420 eV Core-core repulsion = 12476.275403 eV Total energy + Delta-G solvation = -2387.103017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84512 -36.61933 -34.47382 -32.78715 -30.16981 -26.79825 -26.61659 -25.83253 -22.68870 -21.30775 -20.28910 -18.39376 -17.04364 -16.33260 -15.43976 -15.03133 -14.50174 -14.20365 -13.71376 -13.18932 -13.12364 -12.49270 -12.15274 -11.84412 -11.69854 -11.41048 -11.07226 -10.93117 -10.69576 -10.60811 -10.55195 -10.27585 -10.04392 -9.96158 -9.62706 -9.26559 -9.04250 -8.41269 -7.05295 -6.01235 -4.02034 3.32031 3.39582 3.44283 4.08402 4.44908 4.53027 5.00330 5.30409 5.34536 5.35670 5.53094 5.62654 5.69102 5.77380 5.85495 5.92787 6.02150 6.07399 6.17204 6.29692 6.33477 6.53367 6.68587 6.80613 6.84275 6.90607 7.35207 7.43277 7.78006 7.82956 8.13690 8.24990 8.57848 9.05793 9.61871 11.09538 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.009230 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.849063 B = 3032.934029 C = 3618.294138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.500 5.500 5 C 0.189 3.811 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.044 3.956 15 H 0.103 0.897 16 C -0.213 4.213 17 C -0.154 4.154 18 H 0.113 0.887 19 C 0.113 3.887 20 O -0.570 6.570 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.034 0.966 29 H -0.001 1.001 30 H 0.260 0.740 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 11.278 4.635 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 C -0.197 4.197 4 N -0.222 5.222 5 C 0.065 3.935 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.067 4.067 15 H 0.121 0.879 16 C -0.252 4.252 17 C -0.173 4.173 18 H 0.131 0.869 19 C 0.035 3.965 20 O -0.375 6.375 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.174 10.669 4.235 11.683 hybrid contribution -0.452 -0.232 -0.325 0.603 sum -2.626 10.437 3.910 11.451 Atomic orbital electron populations 1.22442 0.98444 1.02164 1.00489 1.21619 0.91905 0.94055 0.95226 1.21848 1.01596 0.96148 1.00083 1.62074 1.53375 1.07750 0.98962 1.19849 0.95642 0.80379 0.97639 1.21221 1.23864 0.92616 1.16961 0.91876 1.24973 0.95874 0.96932 0.96785 1.69964 1.39232 1.03659 1.40819 0.86471 0.80407 0.78921 0.81812 1.19671 1.21042 1.21146 1.22566 0.98503 0.97052 0.88534 0.87891 1.23773 0.93977 1.02043 1.05360 1.22323 0.98856 1.02219 0.93893 0.86855 1.21666 0.94746 0.94792 0.85277 1.86551 1.80212 1.46687 1.24040 0.93401 0.93414 0.92094 0.88777 0.92295 0.93343 0.93681 0.94849 0.98297 0.93011 0.87131 0.90054 0.94122 0.93619 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.64 37.16 0.32 -2.73 16 2 C 0.08 1.53 2.74 -67.71 -0.19 1.35 16 3 C -0.14 -2.17 9.23 37.16 0.34 -1.82 16 4 N -0.50 -10.75 4.61 -220.14 -1.02 -11.76 16 5 C 0.19 4.88 3.27 -4.98 -0.02 4.86 16 6 C -0.51 -14.27 8.31 -34.44 -0.29 -14.55 16 7 H 0.06 1.76 7.23 -52.49 -0.38 1.39 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 10 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.04 0.80 4.13 -67.71 -0.28 0.52 16 15 H 0.10 1.65 5.87 -51.92 -0.30 1.35 16 16 C -0.21 -3.90 9.13 -26.73 -0.24 -4.14 16 17 C -0.15 -2.78 5.56 -90.62 -0.50 -3.29 16 18 H 0.11 2.42 7.89 -51.93 -0.41 2.01 16 19 C 0.11 1.60 7.33 37.16 0.27 1.87 16 20 O -0.57 -8.21 13.66 -35.23 -0.48 -8.70 16 21 H 0.05 0.76 6.49 -51.93 -0.34 0.42 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.20 6.75 -51.93 -0.35 0.85 16 24 H 0.09 2.01 6.60 -51.92 -0.34 1.67 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.03 0.94 6.26 -51.93 -0.33 0.61 16 29 H 0.00 -0.02 6.32 -51.93 -0.33 -0.35 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.11 2.37 5.86 -51.93 -0.30 2.07 16 32 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 33 H 0.04 0.50 7.88 -51.93 -0.41 0.10 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.37 3.21 9.12 45.56 0.42 3.63 16 LS Contribution 278.10 15.07 4.19 4.19 Total: -1.00 -30.91 278.10 -6.93 -37.84 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.67 Total: 4.07 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.68 Total: -16.44 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.28 Total: -37.74 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.48 Total: -8.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.91 -6.93 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.130 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds