Wall clock time and date at job start Mon Mar 30 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46903 * 109.46976 * 120.00153 * 2 1 3 5 5 C 1.46899 * 110.99971 * 73.95477 * 4 2 1 6 6 C 1.50700 * 109.47346 * 66.04459 * 5 4 2 7 7 H 1.08001 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99795 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00091 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99580 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47363 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46522 * 120.00387 * 10 8 6 13 13 H 1.48493 * 109.46937 * 240.00058 * 10 8 6 14 14 C 1.46893 * 110.99862 * 309.99946 * 4 2 1 15 15 H 1.09008 * 115.55266 * 335.67351 * 14 4 2 16 16 C 1.53001 * 117.52026 * 121.37435 * 14 4 2 17 17 C 1.53003 * 60.00180 * 107.48013 * 16 14 4 18 18 H 1.09003 * 117.51696 * 252.52391 * 17 16 14 19 19 C 1.52999 * 117.49602 * 107.48891 * 17 16 14 20 20 O 1.42905 * 109.46728 * 116.38172 * 19 17 16 21 21 H 1.08996 * 109.47340 * 300.00002 * 1 2 3 22 22 H 1.09006 * 109.47239 * 60.00195 * 1 2 3 23 23 H 1.09003 * 109.47380 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46964 * 240.00133 * 2 1 3 25 25 H 1.08996 * 109.47175 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46857 * 300.00039 * 3 2 1 27 27 H 1.08996 * 109.46968 * 59.99770 * 3 2 1 28 28 H 1.09002 * 109.47025 * 186.04550 * 5 4 2 29 29 H 1.09004 * 109.47298 * 306.04012 * 5 4 2 30 30 H 0.97006 * 119.99894 * 179.97438 * 9 8 6 31 31 H 1.08996 * 117.49707 * 359.97438 * 16 14 4 32 32 H 1.09001 * 117.49914 * 214.97322 * 16 14 4 33 33 H 1.09000 * 109.47486 * 356.38110 * 19 17 16 34 34 H 1.09001 * 109.47362 * 236.37388 * 19 17 16 35 35 H 0.96696 * 114.00036 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8377 -2.1453 1.0797 6 6 2.7186 -2.6726 -0.0235 7 1 3.3507 -1.9963 -0.5798 8 6 2.7183 -4.0187 -0.3220 9 7 1.9489 -4.8423 0.3557 10 14 3.8097 -4.6723 -1.6900 11 1 4.5719 -3.5501 -2.2940 12 1 4.7574 -5.6706 -1.1327 13 1 2.9677 -5.3158 -2.7301 14 6 1.3640 -0.1778 2.4090 15 1 0.9733 0.8372 2.3363 16 6 0.5850 -1.1746 3.2695 17 6 1.9251 -0.6236 3.7608 18 1 2.7807 -1.2989 3.7526 19 6 1.8948 0.3894 4.9070 20 8 2.5605 -0.1600 6.0460 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 2.1081 -2.6241 2.0208 29 1 0.7952 -2.3631 0.8477 30 1 1.9485 -5.7893 0.1454 31 1 0.5585 -2.2126 2.9379 32 1 -0.3182 -0.8154 3.7628 33 1 0.8602 0.6155 5.1649 34 1 2.4003 1.3040 4.5970 35 1 2.5800 0.4293 6.8123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308130982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:55 Heat of formation + Delta-G solvation = -48.382905 kcal Electronic energy + Delta-G solvation = -14864.405031 eV Core-core repulsion = 12476.275403 eV Total energy + Delta-G solvation = -2388.129628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38904 -37.83460 -35.87635 -34.90252 -31.90662 -28.59119 -27.96178 -27.25662 -24.66624 -22.84443 -21.67383 -20.02083 -18.37196 -18.19576 -17.04786 -16.72057 -16.18735 -15.55905 -15.18376 -14.80466 -14.57737 -14.05576 -13.85175 -13.33852 -13.19821 -13.07869 -12.72695 -12.62714 -12.49445 -12.21069 -12.04853 -11.82212 -11.59614 -11.49919 -11.25330 -11.04455 -10.61985 -10.51607 -8.76598 -8.21477 -6.31187 1.37600 1.38738 1.52101 2.37918 2.72522 3.10598 3.21350 3.62402 3.92910 3.96917 4.23389 4.31671 4.40831 4.42366 4.51756 4.58820 4.70070 4.83306 4.84499 4.89931 5.01181 5.04560 5.16731 5.28398 5.28978 5.36215 5.45181 5.58185 5.66663 6.08340 6.42410 6.70999 6.87248 7.00809 7.38178 8.89376 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.009230 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.849063 B = 3032.934029 C = 3618.294138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 C -0.128 4.128 4 N -0.515 5.515 5 C 0.215 3.785 6 C -0.525 4.525 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.045 3.955 15 H 0.141 0.859 16 C -0.215 4.215 17 C -0.155 4.155 18 H 0.068 0.932 19 C 0.121 3.879 20 O -0.597 6.597 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.065 0.935 28 H -0.003 1.003 29 H -0.027 1.027 30 H 0.263 0.737 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 13.731 4.534 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 C -0.185 4.185 4 N -0.236 5.236 5 C 0.089 3.911 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.202 1.202 14 C -0.064 4.064 15 H 0.159 0.841 16 C -0.253 4.253 17 C -0.175 4.175 18 H 0.086 0.914 19 C 0.044 3.956 20 O -0.405 6.405 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.015 0.985 29 H -0.010 1.010 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.333 13.156 4.152 13.992 hybrid contribution -0.408 -0.995 -0.246 1.103 sum -2.741 12.161 3.906 13.064 Atomic orbital electron populations 1.22333 0.96933 1.00533 1.02788 1.21710 0.93226 0.95719 0.92797 1.21753 1.00999 0.93421 1.02371 1.61967 1.54943 1.05299 1.01417 1.19333 0.93421 0.83373 0.95008 1.21558 1.24121 0.93090 1.17576 0.92163 1.25905 0.97274 0.97216 0.99328 1.70098 1.40774 1.04026 1.42502 0.85363 0.78484 0.78319 0.78645 1.18699 1.20596 1.20195 1.22739 0.98331 0.98257 0.87098 0.84135 1.23669 0.95754 0.99824 1.06098 1.22343 0.96778 1.02491 0.95874 0.91405 1.21614 0.96707 0.93504 0.83811 1.86484 1.80429 1.48383 1.25250 0.91307 0.90804 0.95656 0.92054 0.93209 0.90717 0.91649 0.98462 1.00955 0.92794 0.91584 0.86655 0.91326 0.91427 0.75148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 8.64 71.98 0.62 -4.93 16 2 C 0.07 2.76 2.74 44.92 0.12 2.88 16 3 C -0.13 -3.60 9.23 71.98 0.66 -2.94 16 4 N -0.51 -22.49 4.61 -850.38 -3.92 -26.42 16 5 C 0.21 11.71 3.27 85.56 0.28 11.99 16 6 C -0.53 -30.71 8.31 25.60 0.21 -30.49 16 7 H 0.06 3.47 7.23 -2.91 -0.02 3.45 16 8 C 0.00 0.04 5.46 84.66 0.46 0.50 16 9 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 10 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.05 1.61 4.13 44.92 0.19 1.80 16 15 H 0.14 3.94 5.87 -2.38 -0.01 3.93 16 16 C -0.21 -7.93 9.13 30.60 0.28 -7.65 16 17 C -0.16 -5.61 5.56 -10.79 -0.06 -5.67 16 18 H 0.07 3.06 7.89 -2.39 -0.02 3.05 16 19 C 0.12 3.09 7.33 71.98 0.53 3.62 16 20 O -0.60 -16.03 13.66 -148.98 -2.04 -18.06 16 21 H 0.07 1.97 6.49 -2.39 -0.02 1.96 16 22 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.02 0.99 6.75 -2.39 -0.02 0.98 16 24 H 0.06 2.68 6.60 -2.38 -0.02 2.66 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.06 1.58 6.70 -2.39 -0.02 1.56 16 28 H 0.00 -0.16 6.26 -2.39 -0.01 -0.18 16 29 H -0.03 -1.59 6.32 -2.39 -0.02 -1.61 16 30 H 0.26 15.30 8.31 -92.70 -0.77 14.52 16 31 H 0.07 3.05 5.86 -2.39 -0.01 3.03 16 32 H 0.12 3.41 8.03 -2.39 -0.02 3.39 16 33 H 0.07 1.40 7.88 -2.39 -0.02 1.38 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.40 5.76 9.12 -74.06 -0.68 5.09 16 Total: -1.00 -70.75 278.10 0.05 -70.70 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.40 Total: 14.56 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.30 Total: -30.89 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.64 Total: -83.92 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -2.04 Total: -18.06 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.75 0.05 -70.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds