Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 N 1.46498 * 109.47413 * 120.00111 * 2 1 3 5 5 C 1.36934 * 120.00250 * 122.90546 * 4 2 1 6 6 H 1.07997 * 120.00104 * 208.85379 * 5 4 2 7 7 C 1.38810 * 119.99807 * 28.86193 * 5 4 2 8 8 N 1.31616 * 120.00035 * 19.14557 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 199.14708 * 7 5 4 10 10 H 1.48506 * 109.46553 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47171 * 119.99463 * 9 7 5 12 12 H 1.48494 * 109.47451 * 239.99943 * 9 7 5 13 13 C 1.46505 * 119.99540 * 302.91412 * 4 2 1 14 14 C 1.52996 * 109.47100 * 269.99674 * 13 4 2 15 15 C 1.52996 * 109.47349 * 180.02562 * 14 13 4 16 16 O 1.42901 * 115.55009 * 39.33018 * 15 14 13 17 17 C 1.53000 * 117.49936 * 253.62253 * 15 14 13 18 18 C 1.52997 * 117.50155 * 184.99709 * 15 14 13 19 19 H 1.09003 * 109.47213 * 300.00282 * 1 2 3 20 20 H 1.09004 * 109.46968 * 59.99815 * 1 2 3 21 21 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47077 * 240.00230 * 2 1 3 23 23 H 1.08999 * 109.47310 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47328 * 299.99965 * 3 2 1 25 25 H 1.09000 * 109.46934 * 60.00143 * 3 2 1 26 26 H 0.97003 * 120.00174 * 180.02562 * 8 7 5 27 27 H 1.09007 * 109.46776 * 149.99617 * 13 4 2 28 28 H 1.08998 * 109.47036 * 30.00065 * 13 4 2 29 29 H 1.08999 * 109.47354 * 60.00021 * 14 13 4 30 30 H 1.09009 * 109.47027 * 300.00344 * 14 13 4 31 31 H 0.96706 * 113.99887 * 325.58118 * 16 15 14 32 32 H 1.08998 * 117.49782 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.49940 * 145.01831 * 17 15 14 34 34 H 1.09002 * 117.50239 * 214.97971 * 18 15 14 35 35 H 1.09003 * 117.49827 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8540 -1.7682 1.0714 6 1 2.8530 -2.5424 1.8244 7 6 3.7025 -1.8654 -0.0229 8 7 3.9911 -0.7930 -0.7293 9 14 4.4349 -3.5183 -0.4930 10 1 3.9580 -4.5582 0.4539 11 1 4.0126 -3.8727 -1.8719 12 1 5.9165 -3.4381 -0.4343 13 6 1.6125 -0.2284 2.5258 14 6 2.6130 0.8131 3.0310 15 6 2.1895 1.2954 4.4198 16 8 1.6751 0.2872 5.2921 17 6 1.5872 2.6978 4.5274 18 6 2.9995 2.4295 5.0512 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 4.5837 -0.8610 -1.4942 27 1 1.5901 -1.0741 3.2132 28 1 0.6203 0.2191 2.4677 29 1 2.6355 1.6587 2.3436 30 1 3.6052 0.3656 3.0890 31 1 1.1706 -0.4034 4.8406 32 1 1.4930 3.2769 3.6088 33 1 0.7982 2.8515 5.2636 34 1 3.1397 2.4067 6.1320 35 1 3.8344 2.8317 4.4773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308157062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -8.419734 kcal Electronic energy + Delta-G solvation = -15144.039554 eV Core-core repulsion = 12757.642859 eV Total energy + Delta-G solvation = -2386.396695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.50671 -36.42816 -33.73589 -31.89062 -31.21457 -28.39845 -26.06485 -24.16560 -22.36533 -21.97650 -19.89542 -19.05090 -17.02872 -16.41480 -14.88742 -14.46976 -14.37339 -14.11558 -13.47252 -13.05850 -12.53197 -12.45166 -11.99462 -11.59796 -11.53892 -11.26159 -11.23330 -11.10426 -10.87629 -10.78095 -10.29885 -10.20529 -9.91549 -9.77995 -9.55894 -9.33588 -8.83033 -8.42779 -6.67628 -5.80652 -3.23504 3.36488 3.45374 3.47317 4.04983 4.36857 4.48413 4.98357 5.23616 5.35598 5.49408 5.61585 5.84856 5.99648 6.06529 6.11675 6.18032 6.29704 6.35953 6.41665 6.47964 6.55174 6.66500 6.75815 6.84831 6.92111 7.03158 7.18965 7.65349 7.72733 7.86499 7.96192 8.47627 9.22978 9.85463 10.38827 11.26262 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031292 B = 0.009653 C = 0.008596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.583531 B = 2899.954418 C = 3256.414319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 C -0.147 4.147 4 N -0.582 5.582 5 C -0.255 4.255 6 H 0.065 0.935 7 C 0.006 3.994 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.144 3.856 14 C -0.131 4.131 15 C 0.070 3.930 16 O -0.540 6.540 17 C -0.205 4.205 18 C -0.171 4.171 19 H 0.038 0.962 20 H 0.039 0.961 21 H 0.045 0.955 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.252 0.748 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.382 0.618 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 4.529 5.083 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 C -0.206 4.206 4 N -0.302 5.302 5 C -0.385 4.385 6 H 0.083 0.917 7 C -0.193 4.193 8 N -0.537 5.537 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.218 1.218 13 C 0.018 3.982 14 C -0.171 4.171 15 C 0.028 3.972 16 O -0.347 6.347 17 C -0.243 4.243 18 C -0.208 4.208 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.114 0.886 23 H 0.091 0.909 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.316 4.868 5.371 8.437 hybrid contribution 0.276 -0.957 -0.631 1.180 sum -4.040 3.911 4.740 7.354 Atomic orbital electron populations 1.22371 1.00387 1.00283 0.99344 1.20261 0.88336 0.91910 0.92045 1.22247 1.03253 0.97720 0.97372 1.43983 1.53935 1.33628 0.98664 1.19203 1.14214 0.96925 1.08141 0.91724 1.25014 0.96999 0.96801 1.00530 1.70043 1.37094 1.26135 1.20463 0.86301 0.78489 0.84242 0.78203 1.20289 1.21612 1.21839 1.20786 0.94761 0.94162 0.88539 1.22515 1.02355 1.01462 0.90778 1.21775 1.00135 0.83493 0.91836 1.86324 1.73299 1.38603 1.36510 1.23573 0.96433 1.01207 1.03076 1.23163 0.94957 1.01758 1.00951 0.94290 0.94195 0.93567 0.88606 0.90860 0.95532 0.95443 0.93782 0.94099 0.94130 0.90487 0.90894 0.76781 0.88677 0.89048 0.88931 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.12 37.16 0.34 -2.82 16 2 C 0.18 4.11 2.39 -67.93 -0.16 3.95 16 3 C -0.15 -3.13 8.15 37.16 0.30 -2.83 16 4 N -0.58 -13.78 2.42 -165.66 -0.40 -14.18 16 5 C -0.26 -6.75 9.57 -15.06 -0.14 -6.89 16 6 H 0.07 1.71 7.90 -52.49 -0.41 1.30 16 7 C 0.01 0.15 4.83 -17.43 -0.08 0.07 16 8 N -0.89 -24.70 10.32 55.49 0.57 -24.13 16 9 Si 0.90 21.32 29.60 -169.99 -5.03 16.29 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.14 2.87 4.49 -4.04 -0.02 2.85 16 14 C -0.13 -2.49 5.50 -26.74 -0.15 -2.64 16 15 C 0.07 1.16 3.13 -90.62 -0.28 0.88 16 16 O -0.54 -9.07 13.83 -35.23 -0.49 -9.55 16 17 C -0.21 -2.99 10.13 -26.73 -0.27 -3.26 16 18 C -0.17 -2.55 10.20 -26.73 -0.27 -2.83 16 19 H 0.04 0.69 6.57 -51.93 -0.34 0.35 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.10 2.51 5.89 -51.93 -0.31 2.20 16 23 H 0.07 1.77 7.29 -51.93 -0.38 1.39 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.53 6.07 -51.93 -0.32 0.22 16 26 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.04 0.78 6.59 -51.92 -0.34 0.44 16 28 H 0.04 0.75 6.28 -51.93 -0.33 0.42 16 29 H 0.08 1.51 5.22 -51.93 -0.27 1.23 16 30 H 0.07 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.38 5.51 6.64 45.56 0.30 5.81 16 32 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 276.81 15.07 4.17 4.17 Total: -1.00 -27.93 276.81 -6.82 -34.75 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.91 Total: 6.17 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.74 Total: -13.53 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.17 Total: -38.30 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.49 Total: -9.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.93 -6.82 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds