Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 N 1.46498 * 109.47413 * 120.00111 * 2 1 3 5 5 C 1.36934 * 120.00250 * 122.90546 * 4 2 1 6 6 H 1.07997 * 120.00104 * 208.85379 * 5 4 2 7 7 C 1.38810 * 119.99807 * 28.86193 * 5 4 2 8 8 N 1.31616 * 120.00035 * 19.14557 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 199.14708 * 7 5 4 10 10 H 1.48506 * 109.46553 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47171 * 119.99463 * 9 7 5 12 12 H 1.48494 * 109.47451 * 239.99943 * 9 7 5 13 13 C 1.46505 * 119.99540 * 302.91412 * 4 2 1 14 14 C 1.52996 * 109.47100 * 269.99674 * 13 4 2 15 15 C 1.52996 * 109.47349 * 180.02562 * 14 13 4 16 16 O 1.42901 * 115.55009 * 39.33018 * 15 14 13 17 17 C 1.53000 * 117.49936 * 253.62253 * 15 14 13 18 18 C 1.52997 * 117.50155 * 184.99709 * 15 14 13 19 19 H 1.09003 * 109.47213 * 300.00282 * 1 2 3 20 20 H 1.09004 * 109.46968 * 59.99815 * 1 2 3 21 21 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47077 * 240.00230 * 2 1 3 23 23 H 1.08999 * 109.47310 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47328 * 299.99965 * 3 2 1 25 25 H 1.09000 * 109.46934 * 60.00143 * 3 2 1 26 26 H 0.97003 * 120.00174 * 180.02562 * 8 7 5 27 27 H 1.09007 * 109.46776 * 149.99617 * 13 4 2 28 28 H 1.08998 * 109.47036 * 30.00065 * 13 4 2 29 29 H 1.08999 * 109.47354 * 60.00021 * 14 13 4 30 30 H 1.09009 * 109.47027 * 300.00344 * 14 13 4 31 31 H 0.96706 * 113.99887 * 325.58118 * 16 15 14 32 32 H 1.08998 * 117.49782 * 359.97438 * 17 15 14 33 33 H 1.09001 * 117.49940 * 145.01831 * 17 15 14 34 34 H 1.09002 * 117.50239 * 214.97971 * 18 15 14 35 35 H 1.09003 * 117.49827 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8540 -1.7682 1.0714 6 1 2.8530 -2.5424 1.8244 7 6 3.7025 -1.8654 -0.0229 8 7 3.9911 -0.7930 -0.7293 9 14 4.4349 -3.5183 -0.4930 10 1 3.9580 -4.5582 0.4539 11 1 4.0126 -3.8727 -1.8719 12 1 5.9165 -3.4381 -0.4343 13 6 1.6125 -0.2284 2.5258 14 6 2.6130 0.8131 3.0310 15 6 2.1895 1.2954 4.4198 16 8 1.6751 0.2872 5.2921 17 6 1.5872 2.6978 4.5274 18 6 2.9995 2.4295 5.0512 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 4.5837 -0.8610 -1.4942 27 1 1.5901 -1.0741 3.2132 28 1 0.6203 0.2191 2.4677 29 1 2.6355 1.6587 2.3436 30 1 3.6052 0.3656 3.0890 31 1 1.1706 -0.4034 4.8406 32 1 1.4930 3.2769 3.6088 33 1 0.7982 2.8515 5.2636 34 1 3.1397 2.4067 6.1320 35 1 3.8344 2.8317 4.4773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308157062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -25.649511 kcal Electronic energy + Delta-G solvation = -15144.786693 eV Core-core repulsion = 12757.642859 eV Total energy + Delta-G solvation = -2387.143834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86649 -38.12900 -34.99107 -33.84781 -32.85646 -30.16393 -27.69892 -26.01929 -23.87425 -23.27197 -21.27509 -20.82692 -18.82682 -17.79595 -16.74900 -16.16382 -15.92496 -15.37326 -15.19980 -14.57864 -14.18026 -14.15675 -13.46920 -13.35177 -13.07579 -12.93637 -12.78122 -12.64680 -12.42234 -12.35493 -12.05697 -11.93551 -11.63413 -11.35926 -11.24699 -11.04464 -10.40468 -10.10190 -8.58511 -7.82442 -5.26255 1.45457 1.49445 1.57805 2.53681 2.83792 3.14120 3.31342 3.51772 3.95361 4.05897 4.19884 4.46276 4.56191 4.66548 4.73281 4.78824 4.82286 4.91634 4.97585 4.99768 5.01787 5.14191 5.21377 5.24523 5.33895 5.36750 5.54307 5.70221 5.83319 6.04988 6.48507 6.75334 7.24547 7.96620 8.42568 9.21605 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031292 B = 0.009653 C = 0.008596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.583531 B = 2899.954418 C = 3256.414319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.175 3.825 3 C -0.133 4.133 4 N -0.596 5.596 5 C -0.262 4.262 6 H 0.059 0.941 7 C -0.041 4.041 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.296 1.296 13 C 0.145 3.855 14 C -0.114 4.114 15 C 0.049 3.951 16 O -0.548 6.548 17 C -0.185 4.185 18 C -0.170 4.170 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.247 0.753 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.390 0.610 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 5.222 5.936 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 C -0.192 4.192 4 N -0.317 5.317 5 C -0.392 4.392 6 H 0.077 0.923 7 C -0.238 4.238 8 N -0.560 5.560 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.224 1.224 13 C 0.019 3.981 14 C -0.155 4.155 15 C 0.007 3.993 16 O -0.357 6.357 17 C -0.222 4.222 18 C -0.207 4.207 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.241 0.759 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.630 5.562 6.241 10.079 hybrid contribution 0.658 -1.161 -0.858 1.587 sum -4.972 4.401 5.383 8.548 Atomic orbital electron populations 1.22198 0.97274 1.00527 1.01136 1.20246 0.90639 0.91888 0.90321 1.22058 1.00836 0.97372 0.98953 1.44159 1.53672 1.33500 1.00386 1.19403 1.14161 0.97809 1.07869 0.92313 1.25612 0.97954 0.99260 1.00967 1.70179 1.37809 1.27387 1.20670 0.85431 0.77286 0.81362 0.77666 1.19613 1.21818 1.22390 1.20887 0.95730 0.94675 0.86846 1.22206 1.00108 1.00615 0.92535 1.21653 1.02488 0.84395 0.90750 1.86311 1.73563 1.39072 1.36718 1.23619 0.96418 0.98569 1.03637 1.23277 0.95580 1.00261 1.01554 0.92568 0.92243 0.94131 0.92499 0.94407 0.93967 0.93640 0.94408 0.93674 0.92013 0.91091 0.94551 0.75890 0.87843 0.87621 0.88017 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.12 71.98 0.66 -4.85 16 2 C 0.18 7.86 2.39 44.99 0.11 7.97 16 3 C -0.13 -5.56 8.15 71.98 0.59 -4.98 16 4 N -0.60 -28.09 2.42 -678.04 -1.64 -29.72 16 5 C -0.26 -13.97 9.57 84.03 0.80 -13.17 16 6 H 0.06 3.14 7.90 -2.91 -0.02 3.12 16 7 C -0.04 -2.25 4.83 84.86 0.41 -1.84 16 8 N -0.92 -51.80 10.32 21.65 0.22 -51.58 16 9 Si 0.95 44.52 29.60 68.60 2.03 46.55 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 13 C 0.14 5.56 4.49 86.38 0.39 5.95 16 14 C -0.11 -4.28 5.50 30.59 0.17 -4.11 16 15 C 0.05 1.54 3.13 -10.80 -0.03 1.51 16 16 O -0.55 -17.35 13.83 -148.98 -2.06 -19.42 16 17 C -0.19 -4.80 10.13 30.60 0.31 -4.49 16 18 C -0.17 -4.68 10.20 30.59 0.31 -4.37 16 19 H 0.06 1.82 6.57 -2.39 -0.02 1.80 16 20 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 3.01 5.89 -2.39 -0.01 3.00 16 23 H 0.04 1.83 7.29 -2.39 -0.02 1.81 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.69 6.07 -2.39 -0.01 1.67 16 26 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.05 1.69 6.59 -2.38 -0.02 1.67 16 28 H 0.06 2.11 6.28 -2.39 -0.01 2.10 16 29 H 0.07 2.71 5.22 -2.39 -0.01 2.70 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.39 10.56 6.64 -74.05 -0.49 10.06 16 32 H 0.10 2.53 8.08 -2.39 -0.02 2.51 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -59.48 276.81 2.84 -56.65 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.57 Total: 19.90 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.71 Total: -22.38 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.41 Total: -81.30 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -2.06 Total: -19.42 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -59.48 2.84 -56.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.998 kcal (2) G-P(sol) polarization free energy of solvation -59.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds