Wall clock time and date at job start Mon Mar 30 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46712 * 2 1 4 4 N 1.46895 * 109.46880 * 240.00011 * 2 1 3 5 5 C 1.46905 * 110.99763 * 210.99075 * 4 2 1 6 6 C 1.50699 * 109.46954 * 74.00681 * 5 4 2 7 7 H 1.07998 * 120.00034 * 4.96141 * 6 5 4 8 8 C 1.37875 * 119.99947 * 184.96369 * 6 5 4 9 9 N 1.31510 * 120.00340 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99904 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47004 * 89.99932 * 10 8 6 12 12 H 1.48502 * 109.46895 * 209.99831 * 10 8 6 13 13 H 1.48498 * 109.47051 * 330.00035 * 10 8 6 14 14 C 1.46900 * 110.99797 * 87.04189 * 4 2 1 15 15 C 1.53005 * 109.47196 * 283.81290 * 14 4 2 16 16 C 1.52996 * 109.47366 * 186.89959 * 15 14 4 17 17 H 1.09002 * 115.71482 * 28.05714 * 16 15 14 18 18 C 1.52995 * 117.77234 * 175.00447 * 16 15 14 19 19 O 1.42902 * 57.63503 * 106.84080 * 18 16 15 20 20 H 1.09001 * 109.47203 * 49.43900 * 1 2 3 21 21 H 1.09003 * 109.47090 * 169.43867 * 1 2 3 22 22 H 1.08999 * 109.47167 * 289.43414 * 1 2 3 23 23 H 1.08997 * 109.46818 * 119.99886 * 2 1 3 24 24 H 1.09003 * 109.47486 * 67.70707 * 3 2 1 25 25 H 1.09001 * 109.47192 * 187.70328 * 3 2 1 26 26 H 1.08998 * 109.47577 * 307.70098 * 3 2 1 27 27 H 1.09007 * 109.46923 * 194.00315 * 5 4 2 28 28 H 1.08997 * 109.47059 * 314.00144 * 5 4 2 29 29 H 0.96996 * 120.00628 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47442 * 43.82072 * 14 4 2 31 31 H 1.09004 * 109.47089 * 163.82203 * 14 4 2 32 32 H 1.08992 * 109.47057 * 306.90278 * 15 14 4 33 33 H 1.09002 * 109.46462 * 66.89707 * 15 14 4 34 34 H 1.09001 * 117.77390 * 213.68037 * 18 16 15 35 35 H 1.09001 * 117.77596 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3035 -1.3563 -0.9368 6 6 3.0711 -2.5846 -0.0953 7 1 2.0640 -2.8910 0.1464 8 6 4.1440 -3.3174 0.3661 9 7 3.9412 -4.3891 1.1008 10 14 5.8858 -2.7879 -0.0525 11 1 6.3865 -1.8612 0.9943 12 1 6.7646 -3.9832 -0.1169 13 1 5.8910 -2.0982 -1.3676 14 6 2.1283 0.2337 -2.3345 15 6 0.7339 0.5168 -2.8971 16 6 0.8593 1.3407 -4.1802 17 1 1.7819 1.2011 -4.7437 18 6 -0.4196 1.6331 -4.9674 19 8 0.2537 2.6349 -4.2023 20 1 -0.3634 0.6682 -0.7807 21 1 -0.3633 -1.0103 -0.1884 22 1 -0.3633 0.3419 0.9691 23 1 1.8933 -0.5138 0.8900 24 1 1.7934 1.9150 0.9509 25 1 3.1212 1.4457 -0.1378 26 1 1.5685 1.9945 -0.8131 27 1 3.7633 -1.6451 -1.8820 28 1 3.9645 -0.6716 -0.4055 29 1 4.6960 -4.9044 1.4257 30 1 2.5815 1.1668 -1.9999 31 1 2.7491 -0.2140 -3.1106 32 1 0.2331 -0.4257 -3.1180 33 1 0.1522 1.0740 -2.1628 34 1 -0.3460 1.6887 -6.0535 35 1 -1.3580 1.2400 -4.5762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308205390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:14 Heat of formation + Delta-G solvation = -1.510848 kcal Electronic energy + Delta-G solvation = -14755.818525 eV Core-core repulsion = 12369.721422 eV Total energy + Delta-G solvation = -2386.097103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29049 -38.05650 -32.84977 -31.86519 -30.78591 -27.35039 -26.70688 -25.76240 -23.08081 -21.69453 -20.93558 -18.88278 -16.75595 -16.39157 -15.94396 -15.53129 -14.69649 -14.35925 -14.05843 -13.40477 -13.16021 -12.59647 -12.29941 -12.17962 -11.98550 -11.72788 -11.64668 -11.00469 -10.90726 -10.78535 -10.53899 -10.46420 -10.09369 -10.02787 -9.81332 -9.66010 -9.28582 -8.56479 -7.32659 -6.04113 -4.00726 3.27665 3.35754 3.37445 3.50765 4.16328 4.42330 4.58078 4.84883 5.00622 5.17628 5.27393 5.43900 5.51941 5.57459 5.64206 5.70785 5.84271 5.91407 6.00868 6.11189 6.22869 6.28464 6.36592 6.39568 6.52963 6.76806 6.77401 6.97443 7.02244 7.65769 7.95819 8.10393 8.69119 9.07532 9.58422 11.09223 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.007538 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.818017 B = 3713.540044 C = 3960.446074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 C -0.178 4.178 4 N -0.520 5.520 5 C 0.162 3.838 6 C -0.505 4.505 7 H 0.081 0.919 8 C 0.067 3.933 9 N -0.901 5.901 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.044 3.956 15 C -0.109 4.109 16 C -0.003 4.003 17 H 0.122 0.878 18 C -0.044 4.044 19 O -0.364 6.364 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.025 0.975 28 H -0.014 1.014 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 10.449 -8.319 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 C -0.236 4.236 4 N -0.244 5.244 5 C 0.036 3.964 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.084 4.084 15 C -0.147 4.147 16 C -0.060 4.060 17 H 0.139 0.861 18 C -0.120 4.120 19 O -0.284 6.284 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.003 0.997 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.853 10.265 -8.228 14.399 hybrid contribution 1.659 0.937 0.044 1.905 sum -4.195 11.202 -8.184 14.493 Atomic orbital electron populations 1.22026 0.95660 1.02174 1.00078 1.21636 0.94953 0.91512 0.95016 1.22448 1.00996 0.98959 1.01221 1.62109 1.30859 1.27748 1.03663 1.20224 0.85644 0.94072 0.96436 1.21055 0.95443 1.07553 1.30317 0.90072 1.24905 0.98712 0.94925 0.94843 1.69889 1.31178 1.17109 1.35827 0.86890 0.85415 0.78271 0.79301 1.20417 1.21190 1.19323 1.22231 0.95336 0.96059 0.94796 1.21813 0.99511 0.99554 0.93816 1.23938 0.95749 0.86926 0.99400 0.86074 1.24313 0.95795 0.95629 0.96304 1.91645 1.48089 1.18963 1.69706 0.93068 0.91756 0.93587 0.89134 0.92962 0.93049 0.92573 0.95739 0.99666 0.92716 0.94145 0.91635 0.89229 0.90097 0.87596 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.92 37.16 0.33 -1.94 16 2 C 0.08 1.45 2.65 -67.72 -0.18 1.27 16 3 C -0.18 -2.88 7.77 37.15 0.29 -2.59 16 4 N -0.52 -10.51 4.27 -228.08 -0.97 -11.48 16 5 C 0.16 3.88 3.72 -4.97 -0.02 3.86 16 6 C -0.51 -14.22 9.00 -34.44 -0.31 -14.53 16 7 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 10 Si 0.87 21.45 27.37 -169.99 -4.65 16.80 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.33 6.69 56.52 0.38 -5.96 16 14 C 0.04 0.73 4.45 -3.82 -0.02 0.72 16 15 C -0.11 -1.52 4.91 -26.73 -0.13 -1.65 16 16 C 0.00 -0.03 6.61 -26.74 -0.18 -0.21 16 17 H 0.12 1.32 8.05 -51.93 -0.42 0.90 16 18 C -0.04 -0.46 11.41 37.15 0.42 -0.04 16 19 O -0.36 -5.28 14.47 -35.23 -0.51 -5.79 16 20 H 0.05 0.74 4.98 -51.93 -0.26 0.48 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.09 1.95 7.14 -51.93 -0.37 1.58 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 26 H 0.06 0.86 5.89 -51.93 -0.31 0.55 16 27 H 0.02 0.59 7.03 -51.92 -0.37 0.23 16 28 H -0.01 -0.35 6.77 -51.93 -0.35 -0.70 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.04 0.66 5.18 -51.93 -0.27 0.40 16 31 H 0.07 1.06 7.59 -51.93 -0.39 0.67 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.16 4.50 -51.93 -0.23 0.93 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -30.78 275.58 -6.56 -37.34 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.47 Total: -1.03 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 0.11 Total: -13.27 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.20 Total: -38.20 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.51 Total: -5.79 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.65 Total: 16.80 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.78 -6.56 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308205390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.829 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds