Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46712 * 2 1 4 4 N 1.46895 * 109.46880 * 240.00011 * 2 1 3 5 5 C 1.46905 * 110.99763 * 210.99075 * 4 2 1 6 6 C 1.50699 * 109.46954 * 74.00681 * 5 4 2 7 7 H 1.07998 * 120.00034 * 4.96141 * 6 5 4 8 8 C 1.37875 * 119.99947 * 184.96369 * 6 5 4 9 9 N 1.31510 * 120.00340 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99904 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47004 * 89.99932 * 10 8 6 12 12 H 1.48502 * 109.46895 * 209.99831 * 10 8 6 13 13 H 1.48498 * 109.47051 * 330.00035 * 10 8 6 14 14 C 1.46900 * 110.99797 * 87.04189 * 4 2 1 15 15 C 1.53005 * 109.47196 * 283.81290 * 14 4 2 16 16 C 1.52996 * 109.47366 * 186.89959 * 15 14 4 17 17 H 1.09002 * 115.71482 * 28.05714 * 16 15 14 18 18 C 1.52995 * 117.77234 * 175.00447 * 16 15 14 19 19 O 1.42902 * 57.63503 * 106.84080 * 18 16 15 20 20 H 1.09001 * 109.47203 * 49.43900 * 1 2 3 21 21 H 1.09003 * 109.47090 * 169.43867 * 1 2 3 22 22 H 1.08999 * 109.47167 * 289.43414 * 1 2 3 23 23 H 1.08997 * 109.46818 * 119.99886 * 2 1 3 24 24 H 1.09003 * 109.47486 * 67.70707 * 3 2 1 25 25 H 1.09001 * 109.47192 * 187.70328 * 3 2 1 26 26 H 1.08998 * 109.47577 * 307.70098 * 3 2 1 27 27 H 1.09007 * 109.46923 * 194.00315 * 5 4 2 28 28 H 1.08997 * 109.47059 * 314.00144 * 5 4 2 29 29 H 0.96996 * 120.00628 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47442 * 43.82072 * 14 4 2 31 31 H 1.09004 * 109.47089 * 163.82203 * 14 4 2 32 32 H 1.08992 * 109.47057 * 306.90278 * 15 14 4 33 33 H 1.09002 * 109.46462 * 66.89707 * 15 14 4 34 34 H 1.09001 * 117.77390 * 213.68037 * 18 16 15 35 35 H 1.09001 * 117.77596 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3035 -1.3563 -0.9368 6 6 3.0711 -2.5846 -0.0953 7 1 2.0640 -2.8910 0.1464 8 6 4.1440 -3.3174 0.3661 9 7 3.9412 -4.3891 1.1008 10 14 5.8858 -2.7879 -0.0525 11 1 6.3865 -1.8612 0.9943 12 1 6.7646 -3.9832 -0.1169 13 1 5.8910 -2.0982 -1.3676 14 6 2.1283 0.2337 -2.3345 15 6 0.7339 0.5168 -2.8971 16 6 0.8593 1.3407 -4.1802 17 1 1.7819 1.2011 -4.7437 18 6 -0.4196 1.6331 -4.9674 19 8 0.2537 2.6349 -4.2023 20 1 -0.3634 0.6682 -0.7807 21 1 -0.3633 -1.0103 -0.1884 22 1 -0.3633 0.3419 0.9691 23 1 1.8933 -0.5138 0.8900 24 1 1.7934 1.9150 0.9509 25 1 3.1212 1.4457 -0.1378 26 1 1.5685 1.9945 -0.8131 27 1 3.7633 -1.6451 -1.8820 28 1 3.9645 -0.6716 -0.4055 29 1 4.6960 -4.9044 1.4257 30 1 2.5815 1.1668 -1.9999 31 1 2.7491 -0.2140 -3.1106 32 1 0.2331 -0.4257 -3.1180 33 1 0.1522 1.0740 -2.1628 34 1 -0.3460 1.6887 -6.0535 35 1 -1.3580 1.2400 -4.5762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308205390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -23.872610 kcal Electronic energy + Delta-G solvation = -14756.788204 eV Core-core repulsion = 12369.721422 eV Total energy + Delta-G solvation = -2387.066782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25155 -39.53727 -34.94208 -33.13489 -32.49301 -28.98447 -28.08601 -26.89493 -24.29513 -23.54639 -22.02363 -20.37195 -18.86929 -17.48623 -17.24784 -16.67758 -16.22778 -15.92510 -15.36322 -14.92364 -14.68112 -14.40035 -13.75259 -13.67889 -13.34287 -13.12260 -12.84617 -12.66103 -12.49334 -12.17846 -12.08416 -11.81372 -11.59592 -11.49412 -11.39909 -11.13808 -10.84924 -10.76804 -8.91834 -8.26497 -6.28709 1.34109 1.35483 1.46472 2.34870 2.62332 3.06969 3.11514 3.39791 3.88715 3.97590 4.10752 4.24417 4.27543 4.42724 4.50040 4.58858 4.68691 4.74130 4.76882 4.82173 4.88133 4.95327 5.01896 5.03954 5.12515 5.19472 5.26943 5.50236 5.56182 5.61601 6.07189 6.48755 6.72531 6.79037 7.34971 8.90448 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038621 B = 0.007538 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.818017 B = 3713.540044 C = 3960.446074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 C -0.167 4.167 4 N -0.535 5.535 5 C 0.173 3.827 6 C -0.510 4.510 7 H 0.036 0.964 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.945 3.055 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.249 1.249 14 C 0.043 3.957 15 C -0.098 4.098 16 C -0.011 4.011 17 H 0.136 0.864 18 C -0.030 4.030 19 O -0.399 6.399 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.028 0.972 28 H -0.014 1.014 29 H 0.266 0.734 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 12.296 -10.003 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 C -0.226 4.226 4 N -0.258 5.258 5 C 0.045 3.955 6 C -0.548 4.548 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.590 5.590 10 Si 0.768 3.232 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.173 1.173 14 C -0.084 4.084 15 C -0.136 4.136 16 C -0.068 4.068 17 H 0.153 0.847 18 C -0.105 4.105 19 O -0.320 6.320 20 H 0.090 0.910 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.003 0.997 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.618 12.131 -9.929 16.653 hybrid contribution 1.447 0.337 0.583 1.596 sum -4.171 12.468 -9.346 16.131 Atomic orbital electron populations 1.21944 0.93673 1.01681 1.01789 1.21638 0.96545 0.92458 0.92871 1.22334 1.00319 0.97215 1.02716 1.62041 1.28813 1.29653 1.05341 1.19962 0.87534 0.92577 0.95387 1.21274 0.93557 1.09220 1.30786 0.94539 1.25828 1.03675 0.94819 0.94660 1.70047 1.32756 1.18719 1.37486 0.85753 0.79249 0.78158 0.80001 1.19610 1.20690 1.17252 1.22328 0.97366 0.95321 0.93422 1.21636 0.97483 0.99840 0.94624 1.23885 0.97660 0.86101 0.99110 0.84676 1.24760 0.95241 0.92831 0.97626 1.91622 1.49444 1.20261 1.70720 0.90972 0.93595 0.92014 0.93155 0.91349 0.93976 0.91152 0.95423 0.99675 0.92526 0.93637 0.91246 0.89304 0.90492 0.84921 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.92 71.98 0.64 -3.54 16 2 C 0.07 2.73 2.65 44.91 0.12 2.85 16 3 C -0.17 -5.15 7.77 71.98 0.56 -4.59 16 4 N -0.53 -21.46 4.27 -875.52 -3.74 -25.19 16 5 C 0.17 8.22 3.72 85.56 0.32 8.54 16 6 C -0.51 -29.58 9.00 25.60 0.23 -29.35 16 7 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 8 C 0.01 0.42 5.47 84.65 0.46 0.88 16 9 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 10 Si 0.94 44.19 27.37 68.60 1.88 46.07 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.25 -10.78 6.69 99.48 0.67 -10.11 16 14 C 0.04 1.36 4.45 86.30 0.38 1.75 16 15 C -0.10 -2.51 4.91 30.59 0.15 -2.36 16 16 C -0.01 -0.23 6.61 30.59 0.20 -0.03 16 17 H 0.14 2.54 8.05 -2.39 -0.02 2.52 16 18 C -0.03 -0.51 11.41 71.98 0.82 0.31 16 19 O -0.40 -10.54 14.47 -148.98 -2.16 -12.70 16 20 H 0.07 1.95 4.98 -2.39 -0.01 1.94 16 21 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 2.25 7.14 -2.39 -0.02 2.24 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.36 7.34 -2.39 -0.02 1.34 16 26 H 0.07 1.97 5.89 -2.39 -0.01 1.95 16 27 H 0.03 1.30 7.03 -2.38 -0.02 1.28 16 28 H -0.01 -0.69 6.77 -2.39 -0.02 -0.70 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.05 1.39 5.18 -2.39 -0.01 1.38 16 31 H 0.07 2.11 7.59 -2.39 -0.02 2.09 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.02 4.50 -2.39 -0.01 2.01 16 34 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.88 275.58 1.19 -66.69 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.01 Total: 10.03 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.89 Total: -25.55 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.44 Total: -84.55 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -2.16 Total: -12.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -67.88 1.19 -66.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308205390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.822 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds