Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 N 1.46897 * 109.47126 * 119.99867 * 2 1 3 5 5 C 1.46899 * 110.99743 * 91.70677 * 4 2 1 6 6 C 1.50699 * 109.47472 * 66.04471 * 5 4 2 7 7 H 1.08003 * 119.99580 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00245 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00085 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99809 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.46936 * 90.00060 * 10 8 6 12 12 H 1.48496 * 109.46773 * 209.99964 * 10 8 6 13 13 H 1.48497 * 109.46846 * 329.99741 * 10 8 6 14 14 C 1.46894 * 111.00322 * 327.75072 * 4 2 1 15 15 C 1.53001 * 109.47387 * 287.82870 * 14 4 2 16 16 C 1.52995 * 109.47477 * 186.68107 * 15 14 4 17 17 H 1.09002 * 115.71548 * 330.58466 * 16 15 14 18 18 C 1.52996 * 117.77382 * 183.63790 * 16 15 14 19 19 O 1.42904 * 117.77298 * 117.52686 * 16 15 14 20 20 H 1.09003 * 109.47134 * 300.00194 * 1 2 3 21 21 H 1.09001 * 109.46962 * 60.00116 * 1 2 3 22 22 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47056 * 240.00333 * 2 1 3 24 24 H 1.08997 * 109.47065 * 174.59865 * 3 2 1 25 25 H 1.09000 * 109.47000 * 294.59702 * 3 2 1 26 26 H 1.08999 * 109.47276 * 54.59335 * 3 2 1 27 27 H 1.09011 * 109.46871 * 186.04563 * 5 4 2 28 28 H 1.08998 * 109.47049 * 306.03952 * 5 4 2 29 29 H 0.96996 * 120.00145 * 180.02562 * 9 8 6 30 30 H 1.09010 * 109.47212 * 47.82848 * 14 4 2 31 31 H 1.08993 * 109.47556 * 167.82387 * 14 4 2 32 32 H 1.08995 * 109.46828 * 306.68227 * 15 14 4 33 33 H 1.09005 * 109.47283 * 66.68036 * 15 14 4 34 34 H 1.08998 * 117.77179 * 0.02562 * 18 16 15 35 35 H 1.09008 * 117.77717 * 146.32058 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.2337 -2.1210 0.9320 6 6 3.3567 -2.2838 -0.0596 7 1 3.8614 -1.4131 -0.4516 8 6 3.7407 -3.5443 -0.4655 9 7 4.7211 -3.6863 -1.3305 10 14 2.8682 -5.0502 0.2132 11 1 1.7165 -5.3905 -0.6602 12 1 3.8142 -6.1942 0.2530 13 1 2.3807 -4.7630 1.5861 14 6 1.1017 -0.5002 2.3300 15 6 1.2102 0.9397 2.8359 16 6 0.3821 1.0953 4.1129 17 1 -0.4866 0.4422 4.1958 18 6 0.2878 2.4895 4.7360 19 8 1.0716 1.4421 5.3156 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1257 1.4440 0.0967 25 1 1.7578 1.9276 -0.9344 26 1 1.5998 1.9835 0.8376 27 1 2.4924 -2.6297 1.8608 28 1 1.3214 -2.5545 0.5223 29 1 4.9910 -4.5731 -1.6163 30 1 0.0796 -0.6952 2.0053 31 1 1.3653 -1.1883 3.1331 32 1 2.2535 1.1723 3.0489 33 1 0.8341 1.6220 2.0736 34 1 0.8149 3.3043 4.2397 35 1 -0.6431 2.7617 5.2335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308205391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -22.843281 kcal Electronic energy + Delta-G solvation = -14758.861266 eV Core-core repulsion = 12371.839119 eV Total energy + Delta-G solvation = -2387.022147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24159 -39.57470 -34.97254 -33.03098 -32.56865 -29.02261 -28.01938 -26.88322 -24.27516 -23.58531 -22.02914 -20.35750 -18.84989 -17.65778 -17.02392 -16.70494 -16.27533 -15.89880 -15.44718 -14.91644 -14.69960 -14.31694 -13.79795 -13.61441 -13.28722 -13.22156 -12.82061 -12.64652 -12.42911 -12.16151 -11.94002 -11.82511 -11.73445 -11.47268 -11.44519 -11.05831 -10.81466 -10.78260 -8.90400 -8.28850 -6.31198 1.31839 1.34601 1.45199 2.33222 2.59730 3.03792 3.13960 3.41605 3.94127 4.08221 4.10826 4.14602 4.30641 4.40431 4.56622 4.63469 4.67857 4.72814 4.81500 4.86146 4.91004 4.98286 5.02616 5.07952 5.08776 5.20698 5.33754 5.54561 5.55974 5.62844 6.05737 6.49471 6.71463 6.77020 7.32168 8.87954 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.007761 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.397223 B = 3606.918090 C = 3965.411152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.137 4.137 4 N -0.541 5.541 5 C 0.173 3.827 6 C -0.513 4.513 7 H 0.037 0.963 8 C 0.007 3.993 9 N -0.948 5.948 10 Si 0.946 3.054 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.046 3.954 15 C -0.099 4.099 16 C -0.010 4.010 17 H 0.140 0.860 18 C -0.027 4.027 19 O -0.408 6.408 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.021 0.979 28 H -0.012 1.012 29 H 0.266 0.734 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 10.847 7.724 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.038 4.038 3 C -0.194 4.194 4 N -0.265 5.265 5 C 0.046 3.954 6 C -0.551 4.551 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.589 5.589 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.176 1.176 14 C -0.082 4.082 15 C -0.137 4.137 16 C -0.067 4.067 17 H 0.157 0.843 18 C -0.102 4.102 19 O -0.329 6.329 20 H 0.103 0.897 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.039 0.961 28 H 0.005 0.995 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.255 10.816 8.026 18.897 hybrid contribution -0.177 -1.492 -0.206 1.516 sum -13.431 9.325 7.819 18.124 Atomic orbital electron populations 1.22390 0.95646 1.01345 1.03576 1.21676 0.93871 0.95673 0.92595 1.21996 1.00488 0.94534 1.02369 1.62031 1.46587 1.12019 1.05884 1.19914 0.94023 0.86422 0.95089 1.21273 1.16877 0.92925 1.24019 0.94481 1.25836 0.95724 1.02323 0.95110 1.70048 1.30456 1.24159 1.34265 0.85735 0.78698 0.78560 0.80070 1.19042 1.20710 1.17640 1.22274 0.95838 0.97071 0.93037 1.21725 0.99980 0.97054 0.94909 1.23933 0.97800 0.99558 0.85386 0.84284 1.24828 0.98758 0.87699 0.98888 1.91688 1.66309 1.34276 1.40618 0.89659 0.90931 0.94253 0.93319 0.94704 0.91572 0.90083 0.96107 0.99474 0.92478 0.92086 0.93050 0.92352 0.87355 0.85993 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 7.86 71.98 0.57 -4.13 16 2 C 0.07 2.55 2.58 44.92 0.12 2.67 16 3 C -0.14 -4.12 9.04 71.98 0.65 -3.46 16 4 N -0.54 -22.12 4.36 -875.52 -3.81 -25.94 16 5 C 0.17 8.44 3.74 85.56 0.32 8.76 16 6 C -0.51 -30.23 8.68 25.60 0.22 -30.01 16 7 H 0.04 2.44 7.75 -2.91 -0.02 2.42 16 8 C 0.01 0.42 5.47 84.66 0.46 0.89 16 9 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 10 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 14 C 0.05 1.44 4.43 86.30 0.38 1.82 16 15 C -0.10 -2.51 4.52 30.59 0.14 -2.38 16 16 C -0.01 -0.21 6.60 30.59 0.20 -0.01 16 17 H 0.14 2.41 8.08 -2.39 -0.02 2.39 16 18 C -0.03 -0.45 11.42 71.98 0.82 0.37 16 19 O -0.41 -11.51 14.48 -148.98 -2.16 -13.67 16 20 H 0.08 1.86 5.18 -2.39 -0.01 1.85 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.04 1.17 7.73 -2.39 -0.02 1.15 16 23 H 0.05 2.20 6.65 -2.39 -0.02 2.18 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 1.96 4.73 -2.39 -0.01 1.95 16 27 H 0.02 1.04 6.92 -2.38 -0.02 1.02 16 28 H -0.01 -0.59 7.30 -2.39 -0.02 -0.61 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.06 1.67 5.45 -2.38 -0.01 1.66 16 31 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 32 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.11 2.26 4.33 -2.38 -0.01 2.25 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.14 1.42 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -71.28 274.42 1.10 -70.19 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.00 Total: 8.04 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.88 Total: -25.49 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.51 Total: -85.85 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -2.16 Total: -13.67 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.28 1.10 -70.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308205391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.342 kcal (2) G-P(sol) polarization free energy of solvation -71.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds