Wall clock time and date at job start Mon Mar 30 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05589 * 2 1 4 4 C 1.53883 * 110.03101 * 238.58415 * 2 1 3 5 5 C 1.54262 * 106.59757 * 240.71329 * 4 2 1 6 6 C 1.54886 * 104.20061 * 336.39644 * 5 4 2 7 7 C 1.54267 * 110.02918 * 121.42216 * 2 1 3 8 8 H 1.08999 * 110.60201 * 24.15661 * 7 2 1 9 9 N 1.46498 * 110.48325 * 261.57041 * 7 2 1 10 10 C 1.36936 * 120.00056 * 302.47144 * 9 7 2 11 11 H 1.07998 * 120.00369 * 325.57740 * 10 9 7 12 12 C 1.38816 * 119.99882 * 145.57926 * 10 9 7 13 13 N 1.31620 * 120.00056 * 334.22182 * 12 10 9 14 14 Si 1.86794 * 120.00128 * 154.22425 * 12 10 9 15 15 H 1.48503 * 109.47333 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47016 * 299.99788 * 14 12 10 17 17 H 1.48494 * 109.47393 * 59.99597 * 14 12 10 18 18 C 1.46500 * 119.99970 * 122.47398 * 9 7 2 19 19 C 1.52995 * 109.47317 * 84.77327 * 18 9 7 20 20 O 1.42905 * 109.46946 * 61.29143 * 19 18 9 21 21 H 1.08997 * 109.47535 * 302.99635 * 1 2 3 22 22 H 1.09001 * 109.46899 * 62.99386 * 1 2 3 23 23 H 1.08999 * 109.47342 * 182.99151 * 1 2 3 24 24 H 1.09004 * 110.02281 * 121.43159 * 4 2 1 25 25 H 1.08994 * 110.07075 * 0.03040 * 4 2 1 26 26 H 1.08997 * 110.48837 * 217.71468 * 5 4 2 27 27 H 1.09006 * 110.59302 * 95.12412 * 5 4 2 28 28 H 1.09003 * 110.75316 * 279.62728 * 6 5 4 29 29 H 1.09000 * 110.91876 * 156.32886 * 6 5 4 30 30 H 0.96998 * 119.99684 * 354.02598 * 13 12 10 31 31 H 1.09001 * 109.47259 * 204.77749 * 18 9 7 32 32 H 1.08998 * 109.47082 * 324.76997 * 18 9 7 33 33 H 1.08999 * 109.47356 * 181.28905 * 19 18 9 34 34 H 1.08998 * 109.47594 * 301.29170 * 19 18 9 35 35 H 0.96693 * 114.00201 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2338 5 6 2.8875 -1.9406 -0.7036 6 6 3.3136 -1.5009 0.7190 7 6 2.0584 -0.7556 1.2368 8 1 1.3151 -1.4660 1.5987 9 7 2.4230 0.1877 2.2968 10 6 3.3496 1.1661 2.0536 11 1 4.1802 0.9708 1.3915 12 6 3.2214 2.4091 2.6582 13 7 2.0348 2.8414 3.0288 14 14 4.7330 3.4682 2.9458 15 1 4.3302 4.7379 3.6022 16 1 5.6880 2.7408 3.8200 17 1 5.3826 3.7675 1.6445 18 6 1.7962 0.0841 3.6169 19 6 2.5550 -0.9403 4.4628 20 8 3.9057 -0.5074 4.6370 21 1 -0.3634 0.5596 0.8619 22 1 -0.3633 0.4667 -0.9156 23 1 -0.3634 -1.0262 0.0536 24 1 2.6867 -0.0952 -1.8324 25 1 1.2234 -1.1191 -1.8332 26 1 3.7637 -2.1037 -1.3310 27 1 2.2790 -2.8439 -0.6574 28 1 4.1710 -0.8292 0.6751 29 1 3.5344 -2.3662 1.3441 30 1 1.2407 2.3323 2.8025 31 1 1.8254 1.0557 4.1102 32 1 0.7601 -0.2345 3.5032 33 1 2.0751 -1.0342 5.4369 34 1 2.5454 -1.9066 3.9584 35 1 4.4469 -1.1100 5.1652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308286862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:05 Heat of formation + Delta-G solvation = -44.974455 kcal Electronic energy + Delta-G solvation = -15526.427727 eV Core-core repulsion = 13138.445901 eV Total energy + Delta-G solvation = -2387.981826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.20545 -36.13202 -34.17868 -30.83276 -30.50379 -28.49406 -26.24691 -24.23374 -23.30417 -20.53552 -19.78572 -18.91898 -16.70496 -16.61830 -15.35288 -14.45197 -14.09892 -13.76665 -13.44070 -12.96845 -12.69968 -12.52781 -12.11168 -11.86331 -11.58084 -11.32234 -10.59576 -10.49376 -10.40590 -10.17897 -10.07274 -9.98538 -9.91925 -9.81664 -9.63520 -9.11680 -9.04340 -8.15626 -6.61244 -5.84605 -3.12116 3.60212 3.68631 3.83451 4.73686 5.14982 5.28142 5.34826 5.37336 5.52899 5.72303 5.92809 6.02048 6.04714 6.11344 6.16740 6.20905 6.26010 6.34174 6.46102 6.50727 6.53221 6.61904 6.66242 6.74938 6.93689 7.03619 7.12841 7.33628 7.39501 8.26074 8.52360 8.77244 9.31371 10.02166 10.45041 11.36473 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.013024 C = 0.011313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.134641 B = 2149.296999 C = 2474.395870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.177 3.823 8 H 0.048 0.952 9 N -0.576 5.576 10 C -0.316 4.316 11 H 0.048 0.952 12 C -0.018 4.018 13 N -0.916 5.916 14 Si 1.059 2.941 15 H -0.290 1.290 16 H -0.293 1.293 17 H -0.297 1.297 18 C 0.130 3.870 19 C 0.063 3.937 20 O -0.539 6.539 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -8.595 -2.593 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 H 0.106 0.894 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.172 4.172 7 C 0.070 3.930 8 H 0.066 0.934 9 N -0.296 5.296 10 C -0.446 4.446 11 H 0.066 0.934 12 C -0.220 4.220 13 N -0.557 5.557 14 Si 0.890 3.110 15 H -0.216 1.216 16 H -0.220 1.220 17 H -0.224 1.224 18 C 0.003 3.997 19 C -0.017 4.017 20 O -0.340 6.340 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.370 -6.628 -2.284 7.020 hybrid contribution -0.308 -2.102 -0.358 2.154 sum -0.678 -8.729 -2.641 9.145 Atomic orbital electron populations 1.21764 0.96573 0.99971 1.00702 1.22177 0.94207 1.01927 0.94771 0.89352 1.22134 0.98540 0.96909 0.97769 1.22272 0.98729 0.97448 0.97584 1.22853 1.01049 0.99222 0.94063 1.21273 0.92870 0.90581 0.88306 0.93406 1.43804 1.47586 1.33631 1.04546 1.19572 1.02367 0.91692 1.30947 0.93430 1.25666 1.01846 0.94858 0.99616 1.70787 0.97842 1.38770 1.48254 0.83622 0.75543 0.75814 0.76034 1.21560 1.21983 1.22414 1.21103 0.91885 0.99727 0.87003 1.22954 0.83895 0.98029 0.96843 1.86881 1.22034 1.49835 1.75253 0.92953 0.94026 0.94091 0.92748 0.93084 0.92949 0.92856 0.90752 0.93538 0.92361 0.89058 0.94475 0.96217 0.96023 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.86 37.16 0.33 -2.03 16 2 C -0.11 -2.20 3.11 -89.50 -0.28 -2.48 16 3 H 0.09 2.12 7.03 -51.93 -0.36 1.75 16 4 C -0.12 -1.96 6.46 -25.61 -0.17 -2.12 16 5 C -0.12 -1.99 6.83 -25.08 -0.17 -2.16 16 6 C -0.13 -2.58 6.42 -24.74 -0.16 -2.73 16 7 C 0.18 3.72 2.92 -66.27 -0.19 3.53 16 8 H 0.05 0.96 7.60 -51.93 -0.39 0.57 16 9 N -0.58 -14.10 2.21 -163.78 -0.36 -14.46 16 10 C -0.32 -8.72 7.47 -15.06 -0.11 -8.83 16 11 H 0.05 1.37 6.61 -52.49 -0.35 1.02 16 12 C -0.02 -0.53 4.81 -17.43 -0.08 -0.61 16 13 N -0.92 -27.44 12.17 55.49 0.68 -26.77 16 14 Si 1.06 26.45 29.99 -169.99 -5.10 21.35 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 18 C 0.13 3.04 5.08 -4.04 -0.02 3.02 16 19 C 0.06 1.28 7.41 37.16 0.28 1.56 16 20 O -0.54 -11.73 13.23 -35.23 -0.47 -12.19 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.64 6.46 -51.93 -0.34 1.30 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.27 7.95 7.13 -40.82 -0.29 7.66 16 31 H 0.09 2.47 5.38 -51.93 -0.28 2.19 16 32 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 5.57 9.12 45.56 0.42 5.99 16 LS Contribution 276.57 15.07 4.17 4.17 Total: -1.00 -30.69 276.57 -6.67 -37.36 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.01 Total: 3.41 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.58 Total: -12.86 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.31 Total: -41.23 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.47 Total: -12.19 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.10 Total: 21.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.69 -6.67 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.615 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds