Wall clock time and date at job start Mon Mar 30 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05589 * 2 1 4 4 C 1.53883 * 110.03101 * 238.58415 * 2 1 3 5 5 C 1.54262 * 106.59757 * 240.71329 * 4 2 1 6 6 C 1.54886 * 104.20061 * 336.39644 * 5 4 2 7 7 C 1.54267 * 110.02918 * 121.42216 * 2 1 3 8 8 H 1.08999 * 110.60201 * 24.15661 * 7 2 1 9 9 N 1.46498 * 110.48325 * 261.57041 * 7 2 1 10 10 C 1.36936 * 120.00056 * 302.47144 * 9 7 2 11 11 H 1.07998 * 120.00369 * 325.57740 * 10 9 7 12 12 C 1.38816 * 119.99882 * 145.57926 * 10 9 7 13 13 N 1.31620 * 120.00056 * 334.22182 * 12 10 9 14 14 Si 1.86794 * 120.00128 * 154.22425 * 12 10 9 15 15 H 1.48503 * 109.47333 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47016 * 299.99788 * 14 12 10 17 17 H 1.48494 * 109.47393 * 59.99597 * 14 12 10 18 18 C 1.46500 * 119.99970 * 122.47398 * 9 7 2 19 19 C 1.52995 * 109.47317 * 84.77327 * 18 9 7 20 20 O 1.42905 * 109.46946 * 61.29143 * 19 18 9 21 21 H 1.08997 * 109.47535 * 302.99635 * 1 2 3 22 22 H 1.09001 * 109.46899 * 62.99386 * 1 2 3 23 23 H 1.08999 * 109.47342 * 182.99151 * 1 2 3 24 24 H 1.09004 * 110.02281 * 121.43159 * 4 2 1 25 25 H 1.08994 * 110.07075 * 0.03040 * 4 2 1 26 26 H 1.08997 * 110.48837 * 217.71468 * 5 4 2 27 27 H 1.09006 * 110.59302 * 95.12412 * 5 4 2 28 28 H 1.09003 * 110.75316 * 279.62728 * 6 5 4 29 29 H 1.09000 * 110.91876 * 156.32886 * 6 5 4 30 30 H 0.96998 * 119.99684 * 354.02598 * 13 12 10 31 31 H 1.09001 * 109.47259 * 204.77749 * 18 9 7 32 32 H 1.08998 * 109.47082 * 324.76997 * 18 9 7 33 33 H 1.08999 * 109.47356 * 181.28905 * 19 18 9 34 34 H 1.08998 * 109.47594 * 301.29170 * 19 18 9 35 35 H 0.96693 * 114.00201 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0571 -0.7536 -1.2338 5 6 2.8875 -1.9406 -0.7036 6 6 3.3136 -1.5009 0.7190 7 6 2.0584 -0.7556 1.2368 8 1 1.3151 -1.4660 1.5987 9 7 2.4230 0.1877 2.2968 10 6 3.3496 1.1661 2.0536 11 1 4.1802 0.9708 1.3915 12 6 3.2214 2.4091 2.6582 13 7 2.0348 2.8414 3.0288 14 14 4.7330 3.4682 2.9458 15 1 4.3302 4.7379 3.6022 16 1 5.6880 2.7408 3.8200 17 1 5.3826 3.7675 1.6445 18 6 1.7962 0.0841 3.6169 19 6 2.5550 -0.9403 4.4628 20 8 3.9057 -0.5074 4.6370 21 1 -0.3634 0.5596 0.8619 22 1 -0.3633 0.4667 -0.9156 23 1 -0.3634 -1.0262 0.0536 24 1 2.6867 -0.0952 -1.8324 25 1 1.2234 -1.1191 -1.8332 26 1 3.7637 -2.1037 -1.3310 27 1 2.2790 -2.8439 -0.6574 28 1 4.1710 -0.8292 0.6751 29 1 3.5344 -2.3662 1.3441 30 1 1.2407 2.3323 2.8025 31 1 1.8254 1.0557 4.1102 32 1 0.7601 -0.2345 3.5032 33 1 2.0751 -1.0342 5.4369 34 1 2.5454 -1.9066 3.9584 35 1 4.4469 -1.1100 5.1652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308286862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:04 Heat of formation + Delta-G solvation = -65.634724 kcal Electronic energy + Delta-G solvation = -15527.323624 eV Core-core repulsion = 13138.445901 eV Total energy + Delta-G solvation = -2388.877723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84128 -37.78243 -36.02365 -32.83713 -31.97111 -30.19685 -27.96931 -25.93539 -25.04615 -22.28376 -21.44148 -20.53515 -18.66088 -18.27342 -17.00530 -16.22079 -15.63638 -15.53997 -15.37356 -14.53269 -14.35361 -14.13477 -13.72445 -13.53119 -13.34119 -12.90457 -12.54142 -12.10385 -11.99207 -11.90365 -11.88750 -11.73140 -11.48123 -11.44254 -11.16776 -10.99612 -10.71621 -10.26570 -8.65244 -7.99263 -5.27469 1.56846 1.66896 1.83300 2.72844 3.34619 3.49371 3.74371 3.88172 3.98679 4.15089 4.43904 4.51590 4.56514 4.62373 4.64162 4.70120 4.74698 4.83758 4.88161 4.94931 5.03680 5.11073 5.17242 5.32407 5.39136 5.43873 5.54272 5.59501 5.70566 6.08003 6.58152 7.13866 7.30352 7.96664 8.38602 9.15709 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.013024 C = 0.011313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.134641 B = 2149.296999 C = 2474.395870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 H 0.036 0.964 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.129 4.129 7 C 0.169 3.831 8 H 0.063 0.937 9 N -0.589 5.589 10 C -0.300 4.300 11 H 0.031 0.969 12 C -0.071 4.071 13 N -0.943 5.943 14 Si 1.098 2.902 15 H -0.295 1.295 16 H -0.289 1.289 17 H -0.282 1.282 18 C 0.124 3.876 19 C 0.071 3.929 20 O -0.572 6.572 21 H 0.026 0.974 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -10.759 -3.396 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 H 0.055 0.945 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.168 4.168 7 C 0.062 3.938 8 H 0.081 0.919 9 N -0.309 5.309 10 C -0.431 4.431 11 H 0.049 0.951 12 C -0.267 4.267 13 N -0.586 5.586 14 Si 0.926 3.074 15 H -0.222 1.222 16 H -0.216 1.216 17 H -0.208 1.208 18 C -0.002 4.002 19 C -0.009 4.009 20 O -0.377 6.377 21 H 0.045 0.955 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.392 -8.833 -3.092 9.367 hybrid contribution -0.309 -1.505 -0.113 1.541 sum -0.702 -10.338 -3.205 10.846 Atomic orbital electron populations 1.21696 0.94850 1.01371 1.00364 1.22082 0.95714 0.99225 0.96076 0.94495 1.22100 0.99503 0.96804 0.96442 1.22238 0.99585 0.97863 0.95181 1.22747 0.98878 0.98559 0.96627 1.21524 0.94107 0.90324 0.87842 0.91895 1.43941 1.47335 1.33597 1.06024 1.19550 1.02040 0.92068 1.29423 0.95144 1.26645 1.03106 0.96385 1.00551 1.70876 0.97970 1.39257 1.50491 0.83062 0.73403 0.74419 0.76507 1.22164 1.21583 1.20820 1.21100 0.93295 0.98880 0.86933 1.22774 0.83221 0.97120 0.97739 1.86796 1.23065 1.51660 1.76209 0.95509 0.92505 0.91401 0.93332 0.90235 0.91368 0.90175 0.94153 0.92643 0.93715 0.92955 0.93120 0.93470 0.94307 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.86 71.98 0.64 -3.62 16 2 C -0.11 -4.32 3.11 -10.07 -0.03 -4.36 16 3 H 0.04 1.82 7.03 -2.39 -0.02 1.80 16 4 C -0.11 -3.45 6.46 31.32 0.20 -3.25 16 5 C -0.11 -3.20 6.83 31.67 0.22 -2.99 16 6 C -0.13 -4.79 6.42 31.89 0.20 -4.58 16 7 C 0.17 6.89 2.92 46.07 0.13 7.02 16 8 H 0.06 2.38 7.60 -2.39 -0.02 2.36 16 9 N -0.59 -29.03 2.21 -672.09 -1.48 -30.51 16 10 C -0.30 -16.94 7.47 84.03 0.63 -16.31 16 11 H 0.03 1.81 6.61 -2.91 -0.02 1.79 16 12 C -0.07 -4.15 4.81 84.86 0.41 -3.74 16 13 N -0.94 -58.48 12.17 21.65 0.26 -58.21 16 14 Si 1.10 54.64 29.99 68.60 2.06 56.69 16 15 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 C 0.12 5.84 5.08 86.38 0.44 6.28 16 19 C 0.07 2.77 7.41 71.98 0.53 3.30 16 20 O -0.57 -24.25 13.23 -148.98 -1.97 -26.22 16 21 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.06 7.67 -2.39 -0.02 2.04 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.04 1.76 6.46 -2.39 -0.02 1.75 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.25 15.83 7.13 -92.71 -0.66 15.17 16 31 H 0.05 2.91 5.38 -2.39 -0.01 2.90 16 32 H 0.05 2.17 8.06 -2.39 -0.02 2.15 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.37 11.26 9.12 -74.06 -0.68 10.58 16 Total: -1.00 -67.95 276.57 2.73 -65.22 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.49 Total: 15.28 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.37 Total: -22.24 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.22 Total: -88.72 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.97 Total: -26.22 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 2.06 Total: 56.69 kcal Total: -67.95 2.73 -65.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.415 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds