Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05522 * 2 1 4 4 C 1.54267 * 110.03270 * 121.41651 * 2 1 3 5 5 C 1.54888 * 104.19613 * 142.89237 * 4 2 1 6 6 C 1.54881 * 102.74920 * 322.06069 * 5 4 2 7 7 C 1.53870 * 110.03105 * 238.58405 * 2 1 3 8 8 H 1.09000 * 110.03544 * 0.04737 * 7 2 1 9 9 N 1.46500 * 110.03295 * 121.43113 * 7 2 1 10 10 C 1.36939 * 119.99597 * 60.00035 * 9 7 2 11 11 H 1.07996 * 120.00172 * 325.75481 * 10 9 7 12 12 C 1.38813 * 119.99877 * 145.76786 * 10 9 7 13 13 N 1.31621 * 119.99536 * 337.97426 * 12 10 9 14 14 Si 1.86797 * 120.00302 * 157.97770 * 12 10 9 15 15 H 1.48504 * 109.46957 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47518 * 119.99527 * 14 12 10 17 17 H 1.48500 * 109.46863 * 240.00029 * 14 12 10 18 18 C 1.46498 * 120.00006 * 239.99817 * 9 7 2 19 19 C 1.53001 * 109.47079 * 84.48950 * 18 9 7 20 20 O 1.42901 * 109.47019 * 65.00043 * 19 18 9 21 21 H 1.09002 * 109.47354 * 181.41640 * 1 2 3 22 22 H 1.09007 * 109.47403 * 301.41503 * 1 2 3 23 23 H 1.08998 * 109.47183 * 61.41822 * 1 2 3 24 24 H 1.09002 * 110.48888 * 261.57783 * 4 2 1 25 25 H 1.09004 * 110.48488 * 24.21489 * 4 2 1 26 26 H 1.09001 * 110.75262 * 80.37336 * 5 4 2 27 27 H 1.09003 * 110.75632 * 203.55360 * 5 4 2 28 28 H 1.09001 * 110.48408 * 279.26210 * 6 5 4 29 29 H 1.09001 * 110.48718 * 156.62142 * 6 5 4 30 30 H 0.97010 * 119.99673 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.46986 * 324.49140 * 18 9 7 32 32 H 1.09001 * 109.46911 * 204.48813 * 18 9 7 33 33 H 1.09008 * 109.46714 * 304.99765 * 19 18 9 34 34 H 1.08995 * 109.46908 * 185.00339 * 19 18 9 35 35 H 0.96697 * 113.99718 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7191 6 6 2.8874 -1.9406 -0.7035 7 6 2.0570 -0.7535 -1.2337 8 1 1.2229 -1.1185 -1.8329 9 7 2.9033 0.1311 -2.0384 10 6 4.0308 0.6835 -1.4918 11 1 4.0461 0.9573 -0.4473 12 6 5.1540 0.8918 -2.2805 13 7 5.3181 0.1996 -3.3878 14 14 6.4325 2.1545 -1.7702 15 1 6.0161 2.7934 -0.4959 16 1 7.7437 1.4833 -1.5825 17 1 6.5536 3.1911 -2.8266 18 6 2.5433 0.4246 -3.4278 19 6 1.5389 1.5783 -3.4616 20 8 2.1629 2.7676 -2.9734 21 1 -0.3634 -1.0274 0.0254 22 1 -0.3634 0.5357 0.8771 23 1 -0.3633 0.4916 -0.9024 24 1 2.3296 -0.0536 2.0255 25 1 1.3142 -1.4660 1.5966 26 1 4.1709 -0.8291 0.6751 27 1 3.5344 -2.3660 1.3443 28 1 2.2771 -2.8426 -0.6570 29 1 3.7637 -2.1037 -1.3309 30 1 6.1032 0.3449 -3.9388 31 1 2.0962 -0.4597 -3.8819 32 1 3.4380 0.7055 -3.9834 33 1 0.6826 1.3330 -2.8332 34 1 1.2036 1.7382 -4.4863 35 1 1.5831 3.5414 -2.9661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308286863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = -42.210745 kcal Electronic energy + Delta-G solvation = -15604.222943 eV Core-core repulsion = 13216.360960 eV Total energy + Delta-G solvation = -2387.861983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.17520 -35.96413 -33.81030 -30.91335 -30.45047 -28.19387 -26.60939 -24.36382 -23.01880 -20.71390 -19.53781 -18.78242 -16.53821 -16.13442 -15.26480 -14.51269 -14.12571 -13.79582 -13.17666 -13.13276 -12.58004 -12.31265 -12.23045 -11.63667 -11.44096 -10.93014 -10.81786 -10.59820 -10.27505 -10.13313 -9.98458 -9.94661 -9.81858 -9.78228 -9.57456 -9.33071 -9.00565 -8.25493 -6.41297 -5.60301 -3.09838 3.49594 3.57554 3.60790 4.65761 5.27803 5.35645 5.43364 5.48653 5.64065 5.76704 5.93952 6.03439 6.12989 6.22343 6.27198 6.34850 6.38837 6.48075 6.57352 6.61467 6.71397 6.79881 6.86039 6.91237 6.97639 7.20318 7.31334 7.42391 7.80724 8.01623 8.53850 8.73921 9.37612 10.03777 10.57326 11.42547 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.014419 C = 0.011453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.931930 B = 1941.425198 C = 2444.138927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.175 3.825 8 H 0.046 0.954 9 N -0.570 5.570 10 C -0.220 4.220 11 H 0.059 0.941 12 C 0.008 3.992 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.291 1.291 18 C 0.140 3.860 19 C 0.060 3.940 20 O -0.544 6.544 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.033 0.967 32 H 0.108 0.892 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 -0.560 3.597 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.067 3.933 8 H 0.064 0.936 9 N -0.289 5.289 10 C -0.350 4.350 11 H 0.077 0.923 12 C -0.190 4.190 13 N -0.543 5.543 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.224 1.224 17 H -0.218 1.218 18 C 0.013 3.987 19 C -0.021 4.021 20 O -0.345 6.345 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.628 -0.983 3.535 8.464 hybrid contribution 0.071 1.101 0.093 1.107 sum -7.557 0.118 3.628 8.383 Atomic orbital electron populations 1.21817 0.96816 1.00350 1.00342 1.22309 0.93609 1.01348 0.95890 0.90071 1.22352 0.97434 0.98283 0.97196 1.22421 0.98108 0.98788 0.96092 1.22711 1.00550 0.96922 0.96576 1.21067 0.91918 0.89311 0.91023 0.93610 1.43818 1.25015 1.51188 1.08867 1.18834 0.88849 1.32076 0.95250 0.92304 1.24938 0.96721 0.99102 0.98244 1.69978 1.28181 1.39670 1.16467 0.86358 0.81038 0.82097 0.77993 1.20420 1.22373 1.21803 1.21054 0.98442 0.91118 0.88102 1.23118 0.96744 0.88258 0.93953 1.86851 1.40875 1.18641 1.88109 0.93600 0.93946 0.93488 0.93173 0.93095 0.90522 0.93831 0.94203 0.90536 0.94067 0.94832 0.87502 0.96030 0.96468 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.85 37.16 0.33 -1.79 16 2 C -0.11 -2.09 2.86 -89.50 -0.26 -2.34 16 3 H 0.08 1.76 7.09 -51.93 -0.37 1.39 16 4 C -0.11 -1.98 6.36 -25.07 -0.16 -2.13 16 5 C -0.12 -2.20 6.52 -24.74 -0.16 -2.36 16 6 C -0.13 -2.61 6.08 -25.07 -0.15 -2.76 16 7 C 0.17 3.65 3.14 -66.81 -0.21 3.44 16 8 H 0.05 0.92 7.42 -51.93 -0.39 0.53 16 9 N -0.57 -13.92 2.29 -164.39 -0.38 -14.30 16 10 C -0.22 -5.95 7.16 -15.06 -0.11 -6.06 16 11 H 0.06 1.63 6.46 -52.49 -0.34 1.29 16 12 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 13 N -0.90 -26.25 11.35 55.49 0.63 -25.62 16 14 Si 0.89 22.72 29.61 -169.99 -5.03 17.69 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 18 C 0.14 3.32 5.58 -4.04 -0.02 3.30 16 19 C 0.06 1.21 7.39 37.16 0.27 1.48 16 20 O -0.54 -11.68 13.40 -35.23 -0.47 -12.15 16 21 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.78 7.84 -51.93 -0.41 0.38 16 26 H 0.08 1.63 6.75 -51.93 -0.35 1.28 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.82 7.96 -51.93 -0.41 1.40 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 32 H 0.11 2.94 5.36 -51.93 -0.28 2.67 16 33 H 0.02 0.41 7.96 -51.92 -0.41 0.00 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.35 5.49 9.12 45.56 0.42 5.90 16 LS Contribution 275.91 15.07 4.16 4.16 Total: -1.00 -29.92 275.91 -6.68 -36.61 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.04 Total: 2.71 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.55 Total: -9.09 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.25 Total: -39.92 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.47 Total: -12.15 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.92 -6.68 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.605 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds