Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.05522 * 2 1 4 4 C 1.54267 * 110.03270 * 121.41651 * 2 1 3 5 5 C 1.54888 * 104.19613 * 142.89237 * 4 2 1 6 6 C 1.54881 * 102.74920 * 322.06069 * 5 4 2 7 7 C 1.53870 * 110.03105 * 238.58405 * 2 1 3 8 8 H 1.09000 * 110.03544 * 0.04737 * 7 2 1 9 9 N 1.46500 * 110.03295 * 121.43113 * 7 2 1 10 10 C 1.36939 * 119.99597 * 60.00035 * 9 7 2 11 11 H 1.07996 * 120.00172 * 325.75481 * 10 9 7 12 12 C 1.38813 * 119.99877 * 145.76786 * 10 9 7 13 13 N 1.31621 * 119.99536 * 337.97426 * 12 10 9 14 14 Si 1.86797 * 120.00302 * 157.97770 * 12 10 9 15 15 H 1.48504 * 109.46957 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47518 * 119.99527 * 14 12 10 17 17 H 1.48500 * 109.46863 * 240.00029 * 14 12 10 18 18 C 1.46498 * 120.00006 * 239.99817 * 9 7 2 19 19 C 1.53001 * 109.47079 * 84.48950 * 18 9 7 20 20 O 1.42901 * 109.47019 * 65.00043 * 19 18 9 21 21 H 1.09002 * 109.47354 * 181.41640 * 1 2 3 22 22 H 1.09007 * 109.47403 * 301.41503 * 1 2 3 23 23 H 1.08998 * 109.47183 * 61.41822 * 1 2 3 24 24 H 1.09002 * 110.48888 * 261.57783 * 4 2 1 25 25 H 1.09004 * 110.48488 * 24.21489 * 4 2 1 26 26 H 1.09001 * 110.75262 * 80.37336 * 5 4 2 27 27 H 1.09003 * 110.75632 * 203.55360 * 5 4 2 28 28 H 1.09001 * 110.48408 * 279.26210 * 6 5 4 29 29 H 1.09001 * 110.48718 * 156.62142 * 6 5 4 30 30 H 0.97010 * 119.99673 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.46986 * 324.49140 * 18 9 7 32 32 H 1.09001 * 109.46911 * 204.48813 * 18 9 7 33 33 H 1.09008 * 109.46714 * 304.99765 * 19 18 9 34 34 H 1.08995 * 109.46908 * 185.00339 * 19 18 9 35 35 H 0.96697 * 113.99718 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7191 6 6 2.8874 -1.9406 -0.7035 7 6 2.0570 -0.7535 -1.2337 8 1 1.2229 -1.1185 -1.8329 9 7 2.9033 0.1311 -2.0384 10 6 4.0308 0.6835 -1.4918 11 1 4.0461 0.9573 -0.4473 12 6 5.1540 0.8918 -2.2805 13 7 5.3181 0.1996 -3.3878 14 14 6.4325 2.1545 -1.7702 15 1 6.0161 2.7934 -0.4959 16 1 7.7437 1.4833 -1.5825 17 1 6.5536 3.1911 -2.8266 18 6 2.5433 0.4246 -3.4278 19 6 1.5389 1.5783 -3.4616 20 8 2.1629 2.7676 -2.9734 21 1 -0.3634 -1.0274 0.0254 22 1 -0.3634 0.5357 0.8771 23 1 -0.3633 0.4916 -0.9024 24 1 2.3296 -0.0536 2.0255 25 1 1.3142 -1.4660 1.5966 26 1 4.1709 -0.8291 0.6751 27 1 3.5344 -2.3660 1.3443 28 1 2.2771 -2.8426 -0.6570 29 1 3.7637 -2.1037 -1.3309 30 1 6.1032 0.3449 -3.9388 31 1 2.0962 -0.4597 -3.8819 32 1 3.4380 0.7055 -3.9834 33 1 0.6826 1.3330 -2.8332 34 1 1.2036 1.7382 -4.4863 35 1 1.5831 3.5414 -2.9661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308286863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = -62.215996 kcal Electronic energy + Delta-G solvation = -15605.090436 eV Core-core repulsion = 13216.360960 eV Total energy + Delta-G solvation = -2388.729476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80622 -37.60768 -35.65462 -32.90634 -31.87703 -29.90368 -28.38776 -25.99763 -24.72627 -22.47899 -21.09824 -20.46955 -18.21113 -18.03896 -16.99964 -16.37042 -15.94214 -15.33793 -14.90354 -14.71725 -14.24278 -13.99720 -13.61898 -13.20961 -13.10770 -12.86266 -12.75244 -12.46964 -12.06777 -11.76761 -11.63844 -11.53139 -11.50249 -11.33197 -11.26020 -11.03399 -10.62847 -10.33152 -8.41916 -7.69137 -5.20720 1.43674 1.48134 1.55911 2.59625 3.39632 3.63779 3.83856 3.96319 4.05862 4.26898 4.53588 4.61206 4.68959 4.76965 4.81699 4.83675 4.91289 4.97891 5.02201 5.09397 5.13296 5.25305 5.28634 5.38927 5.51089 5.62256 5.67061 5.80012 5.84390 5.93005 6.60667 7.21345 7.32857 8.06011 8.53052 9.29272 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.014419 C = 0.011453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.931930 B = 1941.425198 C = 2444.138927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 H 0.046 0.954 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.166 3.834 8 H 0.057 0.943 9 N -0.582 5.582 10 C -0.202 4.202 11 H 0.049 0.951 12 C -0.045 4.045 13 N -0.927 5.927 14 Si 0.941 3.059 15 H -0.274 1.274 16 H -0.297 1.297 17 H -0.298 1.298 18 C 0.133 3.867 19 C 0.070 3.930 20 O -0.575 6.575 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.243 0.757 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 -0.752 4.919 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 H 0.065 0.935 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.165 4.165 7 C 0.059 3.941 8 H 0.076 0.924 9 N -0.302 5.302 10 C -0.333 4.333 11 H 0.067 0.933 12 C -0.239 4.239 13 N -0.575 5.575 14 Si 0.772 3.228 15 H -0.199 1.199 16 H -0.225 1.225 17 H -0.226 1.226 18 C 0.006 3.994 19 C -0.010 4.010 20 O -0.380 6.380 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.777 -1.161 4.876 10.987 hybrid contribution 0.665 1.134 -0.306 1.349 sum -9.112 -0.027 4.570 10.194 Atomic orbital electron populations 1.21743 0.93870 1.01836 1.01114 1.22160 0.96009 0.99053 0.95373 0.93513 1.22329 0.96960 0.98594 0.96533 1.22365 0.97849 0.99267 0.95819 1.22645 0.99178 0.98057 0.96626 1.21334 0.91741 0.89287 0.91726 0.92435 1.43989 1.24859 1.52039 1.09323 1.18858 0.89352 1.30453 0.94604 0.93335 1.25462 0.98544 1.01008 0.98901 1.70097 1.28563 1.41249 1.17564 0.85597 0.79451 0.80276 0.77461 1.19875 1.22486 1.22596 1.21012 0.97906 0.92992 0.87475 1.22873 0.95565 0.86707 0.95813 1.86766 1.42788 1.20063 1.88375 0.91751 0.92219 0.93722 0.92593 0.90050 0.93958 0.91333 0.91281 0.94924 0.94786 0.94110 0.91344 0.94371 0.93852 0.78011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.85 71.98 0.64 -2.85 16 2 C -0.11 -3.72 2.86 -10.07 -0.03 -3.75 16 3 H 0.05 1.97 7.09 -2.39 -0.02 1.96 16 4 C -0.11 -3.33 6.36 31.67 0.20 -3.13 16 5 C -0.12 -4.18 6.52 31.88 0.21 -3.97 16 6 C -0.13 -4.98 6.08 31.67 0.19 -4.78 16 7 C 0.17 6.70 3.14 45.72 0.14 6.85 16 8 H 0.06 2.17 7.42 -2.39 -0.02 2.15 16 9 N -0.58 -28.52 2.29 -674.02 -1.54 -30.07 16 10 C -0.20 -11.09 7.16 84.03 0.60 -10.48 16 11 H 0.05 2.75 6.46 -2.91 -0.02 2.73 16 12 C -0.04 -2.57 4.92 84.86 0.42 -2.15 16 13 N -0.93 -56.06 11.35 21.65 0.25 -55.81 16 14 Si 0.94 47.80 29.61 68.60 2.03 49.83 16 15 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 16 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 17 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 18 C 0.13 6.32 5.58 86.38 0.48 6.80 16 19 C 0.07 2.72 7.39 71.98 0.53 3.25 16 20 O -0.58 -24.05 13.40 -148.98 -2.00 -26.04 16 21 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 22 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.04 1.23 7.96 -2.39 -0.02 1.21 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 2.10 7.84 -2.38 -0.02 2.08 16 26 H 0.04 1.80 6.75 -2.39 -0.02 1.79 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.56 7.96 -2.39 -0.02 1.54 16 30 H 0.24 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 32 H 0.07 3.87 5.36 -2.39 -0.01 3.85 16 33 H 0.04 1.35 7.96 -2.38 -0.02 1.33 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 11.07 9.12 -74.06 -0.68 10.39 16 Total: -1.00 -65.66 275.91 2.51 -63.16 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.38 Total: 13.15 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 3.39 Total: -14.22 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.30 Total: -85.88 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -2.00 Total: -26.04 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -65.66 2.51 -63.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.940 kcal (2) G-P(sol) polarization free energy of solvation -65.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds