Wall clock time and date at job start Mon Mar 30 2020 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.01496 * 2 1 4 4 C 1.54265 * 110.03154 * 121.39494 * 2 1 3 5 5 C 1.54896 * 104.19388 * 142.89588 * 4 2 1 6 6 C 1.54893 * 102.74824 * 322.05383 * 5 4 2 7 7 C 1.53878 * 110.03082 * 238.55995 * 2 1 3 8 8 H 1.08999 * 110.03177 * 121.43123 * 7 2 1 9 9 N 1.46499 * 110.03354 * 359.97438 * 7 2 1 10 10 C 1.36941 * 119.99919 * 293.78098 * 9 7 2 11 11 H 1.07991 * 119.99856 * 326.23577 * 10 9 7 12 12 C 1.38814 * 119.99971 * 146.23956 * 10 9 7 13 13 N 1.31627 * 119.99798 * 335.75717 * 12 10 9 14 14 Si 1.86802 * 120.00071 * 155.75707 * 12 10 9 15 15 H 1.48503 * 109.46838 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47053 * 119.99822 * 14 12 10 17 17 H 1.48499 * 109.47058 * 239.99811 * 14 12 10 18 18 C 1.46502 * 120.00177 * 113.77403 * 9 7 2 19 19 C 1.53004 * 109.46552 * 84.73268 * 18 9 7 20 20 O 1.42903 * 109.47110 * 65.00725 * 19 18 9 21 21 H 1.09004 * 109.47277 * 308.38243 * 1 2 3 22 22 H 1.08997 * 109.47261 * 68.38022 * 1 2 3 23 23 H 1.09008 * 109.47384 * 188.38522 * 1 2 3 24 24 H 1.09003 * 110.48867 * 261.56888 * 4 2 1 25 25 H 1.08998 * 110.49131 * 24.08598 * 4 2 1 26 26 H 1.08993 * 110.75602 * 80.36987 * 5 4 2 27 27 H 1.09004 * 110.75180 * 203.55689 * 5 4 2 28 28 H 1.08989 * 110.48506 * 156.62268 * 6 5 4 29 29 H 1.09002 * 110.48583 * 279.13302 * 6 5 4 30 30 H 0.96999 * 119.99594 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.47278 * 204.73645 * 18 9 7 32 32 H 1.08996 * 109.46990 * 324.73806 * 18 9 7 33 33 H 1.08999 * 109.46702 * 185.00164 * 19 18 9 34 34 H 1.08991 * 109.47542 * 304.99979 * 19 18 9 35 35 H 0.96695 * 114.00062 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0584 -0.7550 1.2371 5 6 3.3137 -1.5005 0.7196 6 6 2.8874 -1.9410 -0.7028 7 6 2.0570 -0.7541 -1.2335 8 1 2.6866 -0.0961 -1.8324 9 7 0.9359 -1.2465 -2.0376 10 6 0.1045 -2.2116 -1.5350 11 1 0.4975 -2.9753 -0.8804 12 6 -1.2434 -2.2081 -1.8668 13 7 -1.8270 -1.0881 -2.2375 14 14 -2.2289 -3.7930 -1.7873 15 1 -1.3465 -4.9029 -1.3460 16 1 -3.3455 -3.6337 -0.8214 17 1 -2.7779 -4.1025 -3.1319 18 6 0.7039 -0.7063 -3.3795 19 6 1.5745 -1.4573 -4.3890 20 8 1.1582 -2.8228 -4.4541 21 1 -0.3634 0.6381 0.8056 22 1 -0.3633 0.3786 -0.9553 23 1 -0.3634 -1.0167 0.1499 24 1 2.3297 -0.0528 2.0255 25 1 1.3134 -1.4638 1.5986 26 1 4.1709 -0.8288 0.6754 27 1 3.5344 -2.3655 1.3451 28 1 3.7636 -2.1043 -1.3302 29 1 2.2790 -2.8442 -0.6562 30 1 -2.7690 -1.0856 -2.4690 31 1 -0.3464 -0.8283 -3.6438 32 1 0.9617 0.3527 -3.3944 33 1 1.4693 -0.9982 -5.3719 34 1 2.6173 -1.4099 -4.0757 35 1 1.6675 -3.3600 -5.0762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308286864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:09 Heat of formation + Delta-G solvation = -29.867856 kcal Electronic energy + Delta-G solvation = -15756.857169 eV Core-core repulsion = 13369.530414 eV Total energy + Delta-G solvation = -2387.326755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.25104 -35.97142 -33.86624 -30.98660 -29.95797 -28.31285 -26.29017 -24.31526 -22.89547 -20.62469 -19.91636 -18.23512 -16.52835 -16.23395 -15.04776 -14.81797 -14.01327 -13.88196 -13.18704 -12.69838 -12.57540 -12.51111 -11.91527 -11.31472 -11.05556 -10.78847 -10.67138 -10.45239 -10.33829 -10.15577 -9.99910 -9.87104 -9.61176 -9.47940 -9.40766 -9.21397 -9.02666 -8.09170 -6.43050 -5.61636 -3.07066 3.49610 3.58090 3.61377 4.65177 5.26744 5.37633 5.48929 5.50300 5.60494 5.78651 6.12188 6.18711 6.27182 6.31189 6.37154 6.43217 6.53276 6.60522 6.68564 6.74109 6.80870 6.88749 7.09012 7.15091 7.24473 7.36867 7.71838 7.77274 8.00563 8.28345 8.51902 8.70387 9.36586 10.00908 10.54712 11.39432 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.015013 C = 0.012075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.046880 B = 1864.621148 C = 2318.205162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 H 0.041 0.959 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.132 4.132 7 C 0.171 3.829 8 H 0.043 0.957 9 N -0.569 5.569 10 C -0.217 4.217 11 H 0.059 0.941 12 C 0.009 3.991 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.297 1.297 17 H -0.292 1.292 18 C 0.141 3.859 19 C 0.060 3.940 20 O -0.544 6.544 21 H -0.001 1.001 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.106 0.894 32 H 0.034 0.966 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 0.765 0.258 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.127 4.127 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.171 4.171 7 C 0.063 3.937 8 H 0.062 0.938 9 N -0.288 5.288 10 C -0.347 4.347 11 H 0.077 0.923 12 C -0.189 4.189 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.225 1.225 17 H -0.219 1.219 18 C 0.015 3.985 19 C -0.021 4.021 20 O -0.345 6.345 21 H 0.018 0.982 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.997 1.021 0.665 7.103 hybrid contribution 0.003 -0.916 -0.495 1.041 sum 7.001 0.105 0.169 7.004 Atomic orbital electron populations 1.21809 0.92313 1.03075 1.00655 1.22202 0.98660 0.96694 0.95159 0.94098 1.22383 0.96857 0.98565 0.97349 1.22420 0.97364 0.98917 0.97443 1.22748 0.98664 1.01354 0.94321 1.21068 0.89160 0.92287 0.91141 0.93828 1.43791 1.29827 1.44541 1.10603 1.18700 0.87715 1.01947 1.26296 0.92342 1.24821 0.96151 0.95884 1.02090 1.69976 1.10191 1.23854 1.49387 0.86401 0.79687 0.84703 0.76939 1.20534 1.22459 1.21864 1.21023 1.02074 0.91882 0.83570 1.23099 0.97862 0.83247 0.97867 1.86847 1.61023 1.21194 1.65413 0.98245 0.90049 0.89915 0.93732 0.91809 0.92912 0.92987 0.93843 0.90261 0.94043 0.87642 0.94774 0.96424 0.96118 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 7.37 37.16 0.27 -2.55 16 2 C -0.11 -2.16 3.47 -89.50 -0.31 -2.47 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -2.05 6.36 -25.07 -0.16 -2.21 16 5 C -0.12 -2.05 6.91 -24.73 -0.17 -2.22 16 6 C -0.13 -2.53 6.38 -25.07 -0.16 -2.69 16 7 C 0.17 3.58 3.41 -66.81 -0.23 3.35 16 8 H 0.04 0.87 7.96 -51.93 -0.41 0.46 16 9 N -0.57 -13.52 1.31 -164.39 -0.22 -13.73 16 10 C -0.22 -5.68 5.64 -15.06 -0.08 -5.76 16 11 H 0.06 1.59 6.29 -52.49 -0.33 1.26 16 12 C 0.01 0.24 4.24 -17.43 -0.07 0.17 16 13 N -0.89 -24.74 10.02 55.49 0.56 -24.19 16 14 Si 0.89 22.29 29.62 -169.99 -5.03 17.25 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 C 0.14 3.27 5.54 -4.04 -0.02 3.25 16 19 C 0.06 1.19 7.39 37.16 0.27 1.46 16 20 O -0.54 -11.52 13.38 -35.23 -0.47 -11.99 16 21 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 22 H 0.08 2.12 6.24 -51.93 -0.32 1.80 16 23 H 0.08 2.12 5.25 -51.92 -0.27 1.85 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.77 8.14 -51.94 -0.42 0.35 16 29 H 0.08 1.71 5.92 -51.93 -0.31 1.40 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.11 2.81 5.41 -51.93 -0.28 2.53 16 32 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.35 5.42 9.12 45.56 0.42 5.83 16 LS Contribution 267.82 15.07 4.04 4.04 Total: -1.00 -28.40 267.82 -6.64 -35.04 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.85 Total: 3.25 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.66 Total: -9.67 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.34 Total: -37.92 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.47 Total: -11.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.40 -6.64 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds