Wall clock time and date at job start Mon Mar 30 2020 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.01496 * 2 1 4 4 C 1.54265 * 110.03154 * 121.39494 * 2 1 3 5 5 C 1.54896 * 104.19388 * 142.89588 * 4 2 1 6 6 C 1.54893 * 102.74824 * 322.05383 * 5 4 2 7 7 C 1.53878 * 110.03082 * 238.55995 * 2 1 3 8 8 H 1.08999 * 110.03177 * 121.43123 * 7 2 1 9 9 N 1.46499 * 110.03354 * 359.97438 * 7 2 1 10 10 C 1.36941 * 119.99919 * 293.78098 * 9 7 2 11 11 H 1.07991 * 119.99856 * 326.23577 * 10 9 7 12 12 C 1.38814 * 119.99971 * 146.23956 * 10 9 7 13 13 N 1.31627 * 119.99798 * 335.75717 * 12 10 9 14 14 Si 1.86802 * 120.00071 * 155.75707 * 12 10 9 15 15 H 1.48503 * 109.46838 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47053 * 119.99822 * 14 12 10 17 17 H 1.48499 * 109.47058 * 239.99811 * 14 12 10 18 18 C 1.46502 * 120.00177 * 113.77403 * 9 7 2 19 19 C 1.53004 * 109.46552 * 84.73268 * 18 9 7 20 20 O 1.42903 * 109.47110 * 65.00725 * 19 18 9 21 21 H 1.09004 * 109.47277 * 308.38243 * 1 2 3 22 22 H 1.08997 * 109.47261 * 68.38022 * 1 2 3 23 23 H 1.09008 * 109.47384 * 188.38522 * 1 2 3 24 24 H 1.09003 * 110.48867 * 261.56888 * 4 2 1 25 25 H 1.08998 * 110.49131 * 24.08598 * 4 2 1 26 26 H 1.08993 * 110.75602 * 80.36987 * 5 4 2 27 27 H 1.09004 * 110.75180 * 203.55689 * 5 4 2 28 28 H 1.08989 * 110.48506 * 156.62268 * 6 5 4 29 29 H 1.09002 * 110.48583 * 279.13302 * 6 5 4 30 30 H 0.96999 * 119.99594 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.47278 * 204.73645 * 18 9 7 32 32 H 1.08996 * 109.46990 * 324.73806 * 18 9 7 33 33 H 1.08999 * 109.46702 * 185.00164 * 19 18 9 34 34 H 1.08991 * 109.47542 * 304.99979 * 19 18 9 35 35 H 0.96695 * 114.00062 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0584 -0.7550 1.2371 5 6 3.3137 -1.5005 0.7196 6 6 2.8874 -1.9410 -0.7028 7 6 2.0570 -0.7541 -1.2335 8 1 2.6866 -0.0961 -1.8324 9 7 0.9359 -1.2465 -2.0376 10 6 0.1045 -2.2116 -1.5350 11 1 0.4975 -2.9753 -0.8804 12 6 -1.2434 -2.2081 -1.8668 13 7 -1.8270 -1.0881 -2.2375 14 14 -2.2289 -3.7930 -1.7873 15 1 -1.3465 -4.9029 -1.3460 16 1 -3.3455 -3.6337 -0.8214 17 1 -2.7779 -4.1025 -3.1319 18 6 0.7039 -0.7063 -3.3795 19 6 1.5745 -1.4573 -4.3890 20 8 1.1582 -2.8228 -4.4541 21 1 -0.3634 0.6381 0.8056 22 1 -0.3633 0.3786 -0.9553 23 1 -0.3634 -1.0167 0.1499 24 1 2.3297 -0.0528 2.0255 25 1 1.3134 -1.4638 1.5986 26 1 4.1709 -0.8288 0.6754 27 1 3.5344 -2.3655 1.3451 28 1 3.7636 -2.1043 -1.3302 29 1 2.2790 -2.8442 -0.6562 30 1 -2.7690 -1.0856 -2.4690 31 1 -0.3464 -0.8283 -3.6438 32 1 0.9617 0.3527 -3.3944 33 1 1.4693 -0.9982 -5.3719 34 1 2.6173 -1.4099 -4.0757 35 1 1.6675 -3.3600 -5.0762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308286864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:09 Heat of formation + Delta-G solvation = -47.874340 kcal Electronic energy + Delta-G solvation = -15757.637989 eV Core-core repulsion = 13369.530414 eV Total energy + Delta-G solvation = -2388.107575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90926 -37.58235 -35.64227 -32.92077 -31.61049 -29.99261 -28.05866 -26.06673 -24.65920 -22.40328 -21.38529 -19.96814 -18.23944 -17.98348 -16.75817 -16.66760 -15.68607 -15.58708 -14.88824 -14.42312 -14.27441 -14.11380 -13.61243 -13.18278 -12.83546 -12.76071 -12.51729 -12.29312 -11.96099 -11.76801 -11.69359 -11.64776 -11.26617 -11.20713 -11.10198 -10.91722 -10.61177 -10.11480 -8.37141 -7.63766 -5.10468 1.46228 1.52009 1.58305 2.63568 3.44311 3.65748 3.86159 4.00654 4.07220 4.30993 4.58022 4.67102 4.75551 4.79092 4.84122 4.94354 4.96781 5.03367 5.10121 5.15964 5.25054 5.27893 5.46250 5.52611 5.64041 5.68115 5.82516 5.89250 5.94751 6.32873 6.62836 7.22719 7.37942 8.08482 8.56413 9.32675 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.015013 C = 0.012075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.046880 B = 1864.621148 C = 2318.205162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.127 4.127 7 C 0.162 3.838 8 H 0.057 0.943 9 N -0.578 5.578 10 C -0.198 4.198 11 H 0.047 0.953 12 C -0.033 4.033 13 N -0.910 5.910 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.300 1.300 17 H -0.301 1.301 18 C 0.136 3.864 19 C 0.069 3.931 20 O -0.575 6.575 21 H 0.007 0.993 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.241 0.759 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 0.945 0.674 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.166 4.166 7 C 0.055 3.945 8 H 0.075 0.925 9 N -0.297 5.297 10 C -0.329 4.329 11 H 0.064 0.936 12 C -0.229 4.229 13 N -0.556 5.556 14 Si 0.763 3.237 15 H -0.203 1.203 16 H -0.228 1.228 17 H -0.229 1.229 18 C 0.009 3.991 19 C -0.011 4.011 20 O -0.380 6.380 21 H 0.026 0.974 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.293 1.187 1.075 9.430 hybrid contribution -0.653 -0.948 -0.638 1.316 sum 8.640 0.238 0.437 8.654 Atomic orbital electron populations 1.21563 0.94764 1.01004 0.99096 1.22188 0.96308 0.97994 0.96279 0.92492 1.22331 0.97068 0.98570 0.96876 1.22380 0.97278 0.99766 0.95505 1.22643 0.98369 0.99144 0.96463 1.21309 0.88534 0.93361 0.91251 0.92484 1.43897 1.30159 1.44282 1.11366 1.18647 0.87728 1.01771 1.24731 0.93592 1.25207 0.97010 0.97217 1.03461 1.70090 1.09686 1.24657 1.51170 0.85762 0.78771 0.83085 0.76074 1.20314 1.22806 1.22909 1.20974 1.00777 0.92957 0.84357 1.22879 0.97495 0.82644 0.98077 1.86764 1.62358 1.22090 1.66755 0.97399 0.93193 0.92841 0.91227 0.93687 0.90318 0.91478 0.92294 0.93263 0.94913 0.91293 0.94081 0.93876 0.94577 0.78021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 7.37 71.98 0.53 -4.43 16 2 C -0.11 -4.14 3.47 -10.07 -0.03 -4.17 16 3 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.11 -3.67 6.36 31.67 0.20 -3.47 16 5 C -0.11 -3.27 6.91 31.89 0.22 -3.05 16 6 C -0.13 -4.55 6.38 31.67 0.20 -4.35 16 7 C 0.16 6.46 3.41 45.72 0.16 6.62 16 8 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 9 N -0.58 -27.20 1.31 -674.01 -0.88 -28.09 16 10 C -0.20 -10.46 5.64 84.03 0.47 -9.99 16 11 H 0.05 2.54 6.29 -2.92 -0.02 2.52 16 12 C -0.03 -1.84 4.24 84.86 0.36 -1.48 16 13 N -0.91 -52.12 10.02 21.65 0.22 -51.90 16 14 Si 0.93 46.69 29.62 68.60 2.03 48.72 16 15 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 17 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 18 C 0.14 6.24 5.54 86.38 0.48 6.72 16 19 C 0.07 2.61 7.39 71.98 0.53 3.14 16 20 O -0.57 -23.53 13.38 -148.98 -1.99 -25.52 16 21 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 22 H 0.05 2.63 6.24 -2.39 -0.01 2.61 16 23 H 0.05 2.78 5.25 -2.38 -0.01 2.76 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.65 7.73 -2.39 -0.02 1.63 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.06 5.92 -2.39 -0.01 2.05 16 30 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.07 3.74 5.41 -2.39 -0.01 3.73 16 32 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.37 10.83 9.12 -74.06 -0.68 10.15 16 Total: -1.00 -61.41 267.82 2.88 -58.53 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.39 Total: 12.72 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 3.12 Total: -14.46 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -0.67 Total: -79.99 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.99 Total: -25.52 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -61.41 2.88 -58.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.657 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds