Wall clock time and date at job start Mon Mar 30 2020 04:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.43706 * 2 1 4 4 C 1.54887 * 110.59757 * 237.38461 * 2 1 3 5 5 C 1.54969 * 102.77640 * 203.35303 * 4 2 1 6 6 C 1.54262 * 104.16008 * 37.88786 * 5 4 2 7 7 C 1.53872 * 106.64025 * 336.44366 * 6 5 4 8 8 H 1.09003 * 110.03783 * 240.69303 * 7 6 5 9 9 N 1.46509 * 110.03047 * 119.26432 * 7 6 5 10 10 C 1.36940 * 119.99862 * 303.87966 * 9 7 6 11 11 H 1.08000 * 119.99683 * 327.26017 * 10 9 7 12 12 C 1.38805 * 120.00011 * 147.25484 * 10 9 7 13 13 N 1.31616 * 120.00225 * 335.50509 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 155.50626 * 12 10 9 15 15 H 1.48501 * 109.47006 * 59.99677 * 14 12 10 16 16 H 1.48499 * 109.47197 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46900 * 299.99977 * 14 12 10 18 18 C 1.46501 * 120.00229 * 123.88233 * 9 7 6 19 19 C 1.52996 * 109.46863 * 95.03324 * 18 9 7 20 20 O 1.42903 * 109.47156 * 65.00663 * 19 18 9 21 21 H 1.08997 * 109.47078 * 297.45983 * 1 2 3 22 22 H 1.09003 * 109.47500 * 57.45548 * 1 2 3 23 23 H 1.08998 * 109.47600 * 177.45815 * 1 2 3 24 24 H 1.09001 * 110.75616 * 321.63530 * 4 2 1 25 25 H 1.09001 * 110.76055 * 84.82441 * 4 2 1 26 26 H 1.09001 * 110.47087 * 279.23115 * 5 4 2 27 27 H 1.08995 * 110.52847 * 156.56897 * 5 4 2 28 28 H 1.09006 * 110.02899 * 217.13959 * 6 5 4 29 29 H 1.08996 * 110.03733 * 95.75946 * 6 5 4 30 30 H 0.96995 * 120.00838 * 185.22859 * 13 12 10 31 31 H 1.08992 * 109.46875 * 215.03837 * 18 9 7 32 32 H 1.09001 * 109.46529 * 335.03656 * 18 9 7 33 33 H 1.09008 * 109.46882 * 184.99733 * 19 18 9 34 34 H 1.08996 * 109.47739 * 304.99815 * 19 18 9 35 35 H 0.96700 * 113.99735 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4943 -1.1959 -0.7574 6 6 3.3184 -1.5371 0.7367 7 6 2.0699 -0.7774 1.2182 8 1 2.3389 -0.0835 2.0146 9 7 1.0598 -1.7245 1.6970 10 6 0.6115 -2.7221 0.8730 11 1 0.5461 -2.5543 -0.1918 12 6 0.2414 -3.9490 1.4064 13 7 0.7412 -4.3436 2.5583 14 14 -0.9663 -5.0400 0.4895 15 1 -0.4104 -5.3818 -0.8444 16 1 -1.1953 -6.2856 1.2649 17 1 -2.2536 -4.3196 0.3195 18 6 0.5294 -1.6042 3.0573 19 6 -0.7700 -0.7970 3.0284 20 8 -1.7633 -1.5193 2.2979 21 1 -0.3633 0.4739 0.9119 22 1 -0.3634 0.5528 -0.8663 23 1 -0.3634 -1.0266 -0.0456 24 1 1.4627 -1.6608 -1.4216 25 1 2.1247 -0.1388 -2.1002 26 1 4.1924 -0.3678 -0.8801 27 1 3.8371 -2.0702 -1.3106 28 1 4.1935 -1.2118 1.2995 29 1 3.1733 -2.6102 0.8602 30 1 0.5426 -5.2314 2.8946 31 1 0.3311 -2.5977 3.4591 32 1 1.2588 -1.0961 3.6880 33 1 -1.1177 -0.6315 4.0482 34 1 -0.5905 0.1635 2.5455 35 1 -2.6155 -1.0660 2.2391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308286865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:12 Heat of formation + Delta-G solvation = -27.981433 kcal Electronic energy + Delta-G solvation = -15887.622127 eV Core-core repulsion = 13500.377174 eV Total energy + Delta-G solvation = -2387.244954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.31646 -35.84180 -33.62328 -30.92564 -30.22270 -28.14450 -26.54925 -24.44015 -22.83224 -20.72634 -19.69576 -18.41155 -16.46687 -16.31206 -15.00843 -14.46262 -14.24968 -13.88805 -13.12902 -12.90828 -12.77931 -12.22450 -11.84283 -11.27083 -11.00878 -10.93738 -10.71651 -10.53653 -10.31216 -10.15750 -10.00749 -9.84674 -9.79421 -9.61003 -9.43442 -9.13898 -8.77511 -8.24182 -6.34894 -5.56930 -3.04480 3.51844 3.57134 3.64334 4.67610 5.34589 5.42801 5.47081 5.52772 5.68304 5.82696 6.09991 6.16160 6.29829 6.38606 6.40447 6.42586 6.48713 6.56293 6.67512 6.75053 6.86461 6.89338 6.93856 6.98339 7.13104 7.17277 7.49017 7.62562 7.86771 8.09687 8.60921 8.78615 9.39496 10.07932 10.60127 11.45311 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.015491 C = 0.012924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.530018 B = 1807.041406 C = 2165.982580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.047 0.953 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.171 3.829 8 H 0.043 0.957 9 N -0.567 5.567 10 C -0.226 4.226 11 H 0.066 0.934 12 C 0.017 3.983 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.289 1.289 16 H -0.297 1.297 17 H -0.282 1.282 18 C 0.134 3.866 19 C 0.060 3.940 20 O -0.536 6.536 21 H 0.043 0.957 22 H 0.016 0.984 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.027 0.973 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 7.648 -2.034 7.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.065 0.935 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.064 3.936 8 H 0.061 0.939 9 N -0.286 5.286 10 C -0.355 4.355 11 H 0.083 0.917 12 C -0.182 4.182 13 N -0.542 5.542 14 Si 0.725 3.275 15 H -0.216 1.216 16 H -0.223 1.223 17 H -0.209 1.209 18 C 0.007 3.993 19 C -0.020 4.020 20 O -0.337 6.337 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.799 7.062 -1.945 7.368 hybrid contribution -1.069 -0.021 -0.316 1.115 sum -0.270 7.041 -2.261 7.400 Atomic orbital electron populations 1.21998 0.94732 1.04799 0.98058 1.22337 0.96525 0.96902 0.96894 0.93451 1.22558 0.96401 0.99831 0.96386 1.22242 0.96603 0.99223 0.97487 1.22609 0.97242 1.03461 0.93800 1.21065 0.88535 0.90764 0.93284 0.93868 1.43813 1.42145 1.31053 1.11556 1.18804 1.35928 0.90289 0.90484 0.91655 1.24884 0.99822 0.96495 0.96998 1.69811 1.44927 1.17870 1.21600 0.86505 0.82976 0.79351 0.78639 1.21578 1.22325 1.20858 1.21158 0.89050 1.02091 0.87007 1.23141 0.92185 0.95253 0.91453 1.86921 1.22270 1.47462 1.77009 0.93841 0.96443 0.88319 0.90624 0.93936 0.93513 0.92929 0.94287 0.89571 0.93899 0.87458 0.94895 0.96987 0.95511 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.14 37.16 0.30 -2.40 16 2 C -0.11 -2.00 3.25 -88.96 -0.29 -2.28 16 3 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -2.09 5.97 -24.70 -0.15 -2.23 16 5 C -0.12 -2.08 6.84 -25.03 -0.17 -2.25 16 6 C -0.13 -2.66 6.25 -25.62 -0.16 -2.82 16 7 C 0.17 3.56 3.35 -66.81 -0.22 3.34 16 8 H 0.04 0.86 7.75 -51.93 -0.40 0.46 16 9 N -0.57 -13.40 1.59 -164.39 -0.26 -13.66 16 10 C -0.23 -5.88 5.48 -15.06 -0.08 -5.96 16 11 H 0.07 1.73 4.41 -52.49 -0.23 1.49 16 12 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 13 N -0.90 -25.91 11.27 55.49 0.63 -25.29 16 14 Si 0.89 22.50 29.62 -169.99 -5.04 17.47 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 16 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 17 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 18 C 0.13 3.11 5.79 -4.04 -0.02 3.09 16 19 C 0.06 1.20 6.77 37.16 0.25 1.45 16 20 O -0.54 -11.46 12.89 -35.23 -0.45 -11.91 16 21 H 0.04 0.83 5.31 -51.93 -0.28 0.56 16 22 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.10 2.23 4.78 -51.93 -0.25 1.98 16 24 H 0.08 1.54 5.97 -51.93 -0.31 1.23 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.06 7.22 -51.93 -0.38 1.69 16 30 H 0.25 7.15 8.32 -40.82 -0.34 6.81 16 31 H 0.11 2.91 5.29 -51.93 -0.27 2.64 16 32 H 0.03 0.71 7.81 -51.93 -0.41 0.31 16 33 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 34 H 0.03 0.51 5.70 -51.93 -0.30 0.22 16 35 H 0.34 5.59 9.12 45.56 0.42 6.00 16 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -28.77 262.19 -6.30 -35.07 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.50 Total: 4.06 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.63 Total: -9.70 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.36 Total: -38.95 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.45 Total: -11.91 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.04 Total: 17.47 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.77 -6.30 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.088 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds