Wall clock time and date at job start Mon Mar 30 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.43706 * 2 1 4 4 C 1.54887 * 110.59757 * 237.38461 * 2 1 3 5 5 C 1.54969 * 102.77640 * 203.35303 * 4 2 1 6 6 C 1.54262 * 104.16008 * 37.88786 * 5 4 2 7 7 C 1.53872 * 106.64025 * 336.44366 * 6 5 4 8 8 H 1.09003 * 110.03783 * 240.69303 * 7 6 5 9 9 N 1.46509 * 110.03047 * 119.26432 * 7 6 5 10 10 C 1.36940 * 119.99862 * 303.87966 * 9 7 6 11 11 H 1.08000 * 119.99683 * 327.26017 * 10 9 7 12 12 C 1.38805 * 120.00011 * 147.25484 * 10 9 7 13 13 N 1.31616 * 120.00225 * 335.50509 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 155.50626 * 12 10 9 15 15 H 1.48501 * 109.47006 * 59.99677 * 14 12 10 16 16 H 1.48499 * 109.47197 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46900 * 299.99977 * 14 12 10 18 18 C 1.46501 * 120.00229 * 123.88233 * 9 7 6 19 19 C 1.52996 * 109.46863 * 95.03324 * 18 9 7 20 20 O 1.42903 * 109.47156 * 65.00663 * 19 18 9 21 21 H 1.08997 * 109.47078 * 297.45983 * 1 2 3 22 22 H 1.09003 * 109.47500 * 57.45548 * 1 2 3 23 23 H 1.08998 * 109.47600 * 177.45815 * 1 2 3 24 24 H 1.09001 * 110.75616 * 321.63530 * 4 2 1 25 25 H 1.09001 * 110.76055 * 84.82441 * 4 2 1 26 26 H 1.09001 * 110.47087 * 279.23115 * 5 4 2 27 27 H 1.08995 * 110.52847 * 156.56897 * 5 4 2 28 28 H 1.09006 * 110.02899 * 217.13959 * 6 5 4 29 29 H 1.08996 * 110.03733 * 95.75946 * 6 5 4 30 30 H 0.96995 * 120.00838 * 185.22859 * 13 12 10 31 31 H 1.08992 * 109.46875 * 215.03837 * 18 9 7 32 32 H 1.09001 * 109.46529 * 335.03656 * 18 9 7 33 33 H 1.09008 * 109.46882 * 184.99733 * 19 18 9 34 34 H 1.08996 * 109.47739 * 304.99815 * 19 18 9 35 35 H 0.96700 * 113.99735 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 -1.2212 5 6 3.4943 -1.1959 -0.7574 6 6 3.3184 -1.5371 0.7367 7 6 2.0699 -0.7774 1.2182 8 1 2.3389 -0.0835 2.0146 9 7 1.0598 -1.7245 1.6970 10 6 0.6115 -2.7221 0.8730 11 1 0.5461 -2.5543 -0.1918 12 6 0.2414 -3.9490 1.4064 13 7 0.7412 -4.3436 2.5583 14 14 -0.9663 -5.0400 0.4895 15 1 -0.4104 -5.3818 -0.8444 16 1 -1.1953 -6.2856 1.2649 17 1 -2.2536 -4.3196 0.3195 18 6 0.5294 -1.6042 3.0573 19 6 -0.7700 -0.7970 3.0284 20 8 -1.7633 -1.5193 2.2979 21 1 -0.3633 0.4739 0.9119 22 1 -0.3634 0.5528 -0.8663 23 1 -0.3634 -1.0266 -0.0456 24 1 1.4627 -1.6608 -1.4216 25 1 2.1247 -0.1388 -2.1002 26 1 4.1924 -0.3678 -0.8801 27 1 3.8371 -2.0702 -1.3106 28 1 4.1935 -1.2118 1.2995 29 1 3.1733 -2.6102 0.8602 30 1 0.5426 -5.2314 2.8946 31 1 0.3311 -2.5977 3.4591 32 1 1.2588 -1.0961 3.6880 33 1 -1.1177 -0.6315 4.0482 34 1 -0.5905 0.1635 2.5455 35 1 -2.6155 -1.0660 2.2391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308286865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:11 Heat of formation + Delta-G solvation = -46.720706 kcal Electronic energy + Delta-G solvation = -15888.434723 eV Core-core repulsion = 13500.377174 eV Total energy + Delta-G solvation = -2388.057550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95583 -37.47143 -35.43414 -32.84655 -31.77953 -29.83308 -28.33672 -26.09972 -24.56526 -22.49780 -21.21604 -20.10063 -18.32086 -17.95409 -16.74640 -16.30735 -15.85659 -15.65152 -14.78314 -14.55917 -14.48814 -13.93252 -13.42815 -13.00060 -12.86926 -12.72676 -12.58833 -12.33210 -12.06488 -11.83426 -11.68077 -11.53522 -11.34791 -11.20361 -11.04056 -10.87027 -10.41987 -10.24182 -8.30565 -7.60945 -5.09119 1.47688 1.53056 1.59198 2.65360 3.48188 3.68687 3.90515 3.97805 4.10735 4.31400 4.55434 4.66883 4.75005 4.82869 4.90507 4.93082 4.97477 5.03540 5.06159 5.14501 5.25958 5.32031 5.37100 5.44286 5.58655 5.65058 5.82109 5.86135 6.02569 6.14201 6.68238 7.28649 7.40165 8.14313 8.60837 9.37427 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.015491 C = 0.012924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.530018 B = 1807.041406 C = 2165.982580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.130 4.130 7 C 0.161 3.839 8 H 0.054 0.946 9 N -0.575 5.575 10 C -0.196 4.196 11 H 0.062 0.938 12 C -0.037 4.037 13 N -0.929 5.929 14 Si 0.936 3.064 15 H -0.284 1.284 16 H -0.306 1.306 17 H -0.286 1.286 18 C 0.126 3.874 19 C 0.071 3.929 20 O -0.565 6.565 21 H 0.044 0.956 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.241 0.759 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 10.005 -3.058 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.170 4.170 7 C 0.054 3.946 8 H 0.072 0.928 9 N -0.294 5.294 10 C -0.326 4.326 11 H 0.079 0.921 12 C -0.232 4.232 13 N -0.577 5.577 14 Si 0.768 3.232 15 H -0.211 1.211 16 H -0.233 1.233 17 H -0.213 1.213 18 C -0.001 4.001 19 C -0.009 4.009 20 O -0.369 6.369 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.059 9.449 -2.989 9.967 hybrid contribution -1.124 -0.652 -0.004 1.299 sum -0.065 8.797 -2.993 9.293 Atomic orbital electron populations 1.21836 0.95146 1.02771 0.99004 1.22304 0.96099 0.97977 0.95743 0.90662 1.22518 0.96030 0.99138 0.97329 1.22217 0.97048 1.00360 0.95177 1.22525 0.97768 1.00367 0.96298 1.21324 0.88102 0.90554 0.94620 0.92774 1.43942 1.43112 1.31009 1.11379 1.18898 1.33122 0.90109 0.90517 0.92052 1.25347 1.01887 0.97971 0.97968 1.69948 1.46969 1.17640 1.23122 0.85811 0.81563 0.77965 0.77876 1.21093 1.23336 1.21276 1.21120 0.91218 1.00839 0.86882 1.22906 0.90505 0.94699 0.92789 1.86848 1.23869 1.48859 1.77348 0.93735 0.94503 0.91798 0.93495 0.91129 0.90433 0.93000 0.92748 0.94177 0.94988 0.91252 0.93786 0.94797 0.93929 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.14 71.98 0.59 -4.12 16 2 C -0.10 -3.46 3.25 -9.72 -0.03 -3.49 16 3 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 4 C -0.11 -3.77 5.97 31.91 0.19 -3.58 16 5 C -0.11 -3.58 6.84 31.70 0.22 -3.36 16 6 C -0.13 -5.07 6.25 31.32 0.20 -4.88 16 7 C 0.16 6.36 3.35 45.71 0.15 6.52 16 8 H 0.05 2.01 7.75 -2.39 -0.02 2.00 16 9 N -0.57 -26.91 1.59 -674.02 -1.07 -27.98 16 10 C -0.20 -10.27 5.48 84.03 0.46 -9.81 16 11 H 0.06 3.26 4.41 -2.91 -0.01 3.25 16 12 C -0.04 -2.09 4.97 84.86 0.42 -1.66 16 13 N -0.93 -55.45 11.27 21.65 0.24 -55.20 16 14 Si 0.94 47.22 29.62 68.60 2.03 49.25 16 15 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 18 C 0.13 5.82 5.79 86.38 0.50 6.32 16 19 C 0.07 2.71 6.77 71.98 0.49 3.20 16 20 O -0.57 -23.52 12.89 -148.98 -1.92 -25.44 16 21 H 0.04 1.57 5.31 -2.39 -0.01 1.55 16 22 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 2.78 4.78 -2.39 -0.01 2.77 16 24 H 0.05 1.84 5.97 -2.39 -0.01 1.83 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.93 7.22 -2.39 -0.02 1.91 16 30 H 0.24 14.30 8.32 -92.71 -0.77 13.53 16 31 H 0.07 3.85 5.29 -2.39 -0.01 3.83 16 32 H 0.04 1.87 7.81 -2.39 -0.02 1.86 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.04 1.51 5.70 -2.39 -0.01 1.49 16 35 H 0.37 11.27 9.12 -74.06 -0.68 10.59 16 Total: -1.00 -62.42 262.19 2.87 -59.55 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.41 Total: 14.69 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.18 Total: -14.86 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -0.83 Total: -83.18 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.92 Total: -25.44 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -62.42 2.87 -59.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308286865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.825 kcal (2) G-P(sol) polarization free energy of solvation -62.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds