Wall clock time and date at job start Mon Mar 30 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46899 * 109.47037 * 60.00153 * 4 2 1 6 6 C 1.46896 * 111.00272 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47270 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47333 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99531 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00509 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00455 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47262 * 90.00080 * 12 10 8 14 14 H 1.48501 * 109.47270 * 210.00191 * 12 10 8 15 15 H 1.48505 * 109.47321 * 330.00171 * 12 10 8 16 16 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 17 17 C 1.53001 * 117.51964 * 231.28841 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 20 20 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 21 21 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 22 22 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 24 24 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 25 25 H 1.00900 * 111.00520 * 56.04391 * 5 4 2 26 26 H 1.09006 * 109.47009 * 299.99660 * 6 5 4 27 27 H 1.08997 * 109.47556 * 59.99733 * 6 5 4 28 28 H 1.09003 * 109.47168 * 299.99476 * 7 6 5 29 29 H 1.08999 * 109.47540 * 59.99730 * 7 6 5 30 30 H 0.96995 * 119.99976 * 180.02562 * 11 10 8 31 31 H 1.09002 * 115.54973 * 85.58625 * 16 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 35 35 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5505 -0.0288 -2.4486 6 6 2.0211 -0.6952 -3.6702 7 6 1.4926 0.0533 -4.8955 8 6 1.9748 -0.6307 -6.1488 9 1 2.5965 -1.5111 -6.0783 10 6 1.6225 -0.1327 -7.3852 11 7 2.0438 -0.7294 -8.4789 12 14 0.5468 1.3895 -7.5070 13 1 1.4051 2.6009 -7.5397 14 1 -0.2647 1.3242 -8.7490 15 1 -0.3554 1.4537 -6.3291 16 6 2.0400 -0.7212 1.2493 17 6 3.0757 0.0040 2.1109 18 6 1.6373 -0.1482 2.6097 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 2.9702 1.4238 0.0004 23 1 3.1301 -0.7208 -1.2493 24 1 1.6767 -1.7489 -1.2492 25 1 1.8198 0.9435 -2.4402 26 1 3.1110 -0.6954 -3.6872 27 1 1.6573 -1.7226 -3.6869 28 1 0.4027 0.0539 -4.8788 29 1 1.8567 1.0806 -4.8787 30 1 1.7962 -0.3788 -9.3487 31 1 2.1253 -1.8046 1.1648 32 1 3.8425 -0.6023 2.5932 33 1 3.3942 0.9949 1.7876 34 1 1.0093 0.7428 2.6145 35 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308326292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:05 Heat of formation + Delta-G solvation = -38.344997 kcal Electronic energy + Delta-G solvation = -14295.891652 eV Core-core repulsion = 11908.197301 eV Total energy + Delta-G solvation = -2387.694352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46970 -36.03027 -34.83404 -32.89697 -31.34634 -29.34247 -26.07841 -23.96069 -22.47217 -21.95120 -20.53054 -19.81416 -17.06046 -16.70147 -16.12175 -15.44493 -14.65174 -14.24563 -13.99814 -13.32071 -13.19295 -12.71217 -12.49929 -12.22214 -12.10685 -11.88250 -11.48232 -11.25997 -11.07011 -10.93174 -10.68383 -10.22086 -10.16647 -10.02492 -9.80928 -9.49570 -9.20879 -8.51724 -7.89023 -6.02707 -4.01054 3.34441 3.41733 3.48586 3.57595 4.10350 4.42948 4.48576 4.72792 4.75296 4.87936 5.10634 5.24948 5.31100 5.32449 5.44505 5.65935 5.76537 5.84811 5.86864 5.94818 6.08317 6.11431 6.20900 6.30619 6.47556 6.79223 7.15032 7.40618 7.59726 7.65227 7.79383 7.95690 8.54944 9.01150 9.59904 11.10653 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.063036 B = 0.005428 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.083607 B = 5156.736668 C = 5330.251542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.163 3.837 3 O -0.555 6.555 4 C 0.038 3.962 5 N -0.688 5.688 6 C 0.074 3.926 7 C -0.010 4.010 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.168 4.168 19 H 0.051 0.949 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.370 0.630 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.340 0.660 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.009 0.991 30 H 0.263 0.737 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 1.712 20.494 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 O -0.361 6.361 4 C -0.092 4.092 5 N -0.319 5.319 6 C -0.055 4.055 7 C -0.047 4.047 8 C -0.560 4.560 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.544 5.544 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.201 4.201 17 C -0.217 4.217 18 C -0.205 4.205 19 H 0.070 0.930 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.218 0.782 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.159 0.841 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.227 1.512 20.290 20.383 hybrid contribution 1.156 0.720 -0.227 1.381 sum -0.070 2.232 20.063 20.187 Atomic orbital electron populations 1.21577 0.91679 1.02210 1.02767 1.20775 0.95409 0.81074 0.90575 1.86588 1.26224 1.26527 1.96776 1.22518 0.96770 0.98983 0.90924 1.60501 1.63638 1.06518 1.01267 1.21960 0.96339 0.98523 0.88639 1.19542 0.97145 0.95303 0.92755 1.21078 1.32234 1.13572 0.89093 0.91178 1.25004 0.95692 0.97047 0.95670 1.69916 1.45998 1.40770 0.97698 0.86744 0.81216 0.83461 0.77703 1.20386 1.21435 1.18722 1.23102 1.04553 0.99816 0.92672 1.22954 0.92634 1.02192 1.03970 1.22863 0.97908 1.03212 0.96507 0.92956 0.90312 0.91585 0.78226 0.95652 0.90554 0.84137 0.96231 0.91852 0.95638 0.97291 0.92740 0.87374 0.89024 0.88365 0.88440 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.53 37.16 0.32 -1.24 16 2 C 0.16 1.94 0.98 -90.62 -0.09 1.85 16 3 O -0.56 -6.76 11.47 -35.23 -0.40 -7.17 16 4 C 0.04 0.53 4.82 -3.83 -0.02 0.51 16 5 N -0.69 -11.79 5.74 -113.79 -0.65 -12.44 16 6 C 0.07 1.51 5.62 -3.83 -0.02 1.49 16 7 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 8 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 9 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 12 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 16 C -0.18 -1.81 5.15 -90.61 -0.47 -2.28 16 17 C -0.18 -1.57 9.74 -26.73 -0.26 -1.83 16 18 C -0.17 -1.52 9.67 -26.73 -0.26 -1.78 16 19 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 20 H 0.08 1.14 7.60 -51.93 -0.39 0.75 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.37 3.50 7.56 45.56 0.34 3.84 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.34 5.77 8.12 -39.29 -0.32 5.46 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.82 6.38 -51.93 -0.33 0.49 16 34 H 0.10 0.95 7.61 -51.93 -0.40 0.55 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 284.07 15.07 4.28 4.28 Total: -1.00 -31.17 284.07 -7.23 -38.40 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.21 Total: 4.14 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.35 Total: -17.24 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.12 Total: -39.96 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.40 Total: -7.17 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.17 -7.23 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308326292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.053 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds