Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46899 * 109.47037 * 60.00153 * 4 2 1 6 6 C 1.46896 * 111.00272 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47270 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47333 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99531 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00509 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00455 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47262 * 90.00080 * 12 10 8 14 14 H 1.48501 * 109.47270 * 210.00191 * 12 10 8 15 15 H 1.48505 * 109.47321 * 330.00171 * 12 10 8 16 16 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 17 17 C 1.53001 * 117.51964 * 231.28841 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 20 20 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 21 21 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 22 22 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 24 24 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 25 25 H 1.00900 * 111.00520 * 56.04391 * 5 4 2 26 26 H 1.09006 * 109.47009 * 299.99660 * 6 5 4 27 27 H 1.08997 * 109.47556 * 59.99733 * 6 5 4 28 28 H 1.09003 * 109.47168 * 299.99476 * 7 6 5 29 29 H 1.08999 * 109.47540 * 59.99730 * 7 6 5 30 30 H 0.96995 * 119.99976 * 180.02562 * 11 10 8 31 31 H 1.09002 * 115.54973 * 85.58625 * 16 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 35 35 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5505 -0.0288 -2.4486 6 6 2.0211 -0.6952 -3.6702 7 6 1.4926 0.0533 -4.8955 8 6 1.9748 -0.6307 -6.1488 9 1 2.5965 -1.5111 -6.0783 10 6 1.6225 -0.1327 -7.3852 11 7 2.0438 -0.7294 -8.4789 12 14 0.5468 1.3895 -7.5070 13 1 1.4051 2.6009 -7.5397 14 1 -0.2647 1.3242 -8.7490 15 1 -0.3554 1.4537 -6.3291 16 6 2.0400 -0.7212 1.2493 17 6 3.0757 0.0040 2.1109 18 6 1.6373 -0.1482 2.6097 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 2.9702 1.4238 0.0004 23 1 3.1301 -0.7208 -1.2493 24 1 1.6767 -1.7489 -1.2492 25 1 1.8198 0.9435 -2.4402 26 1 3.1110 -0.6954 -3.6872 27 1 1.6573 -1.7226 -3.6869 28 1 0.4027 0.0539 -4.8788 29 1 1.8567 1.0806 -4.8787 30 1 1.7962 -0.3788 -9.3487 31 1 2.1253 -1.8046 1.1648 32 1 3.8425 -0.6023 2.5932 33 1 3.3942 0.9949 1.7876 34 1 1.0093 0.7428 2.6145 35 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308326292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = -61.045617 kcal Electronic energy + Delta-G solvation = -14296.876025 eV Core-core repulsion = 11908.197301 eV Total energy + Delta-G solvation = -2388.678724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37366 -37.34123 -35.88526 -34.86906 -32.79489 -30.92037 -27.43395 -25.54823 -23.18700 -23.03169 -22.32780 -20.79199 -18.96161 -17.89110 -17.19223 -16.64187 -16.31232 -15.65751 -15.20831 -14.88768 -14.58926 -14.36809 -13.76312 -13.58128 -13.16028 -12.98675 -12.93854 -12.68660 -12.24347 -12.01550 -11.86117 -11.85003 -11.74194 -11.43663 -11.40304 -10.96017 -10.77705 -10.65016 -9.28983 -8.30929 -6.35596 1.36359 1.38791 1.52188 2.36395 2.84741 3.04746 3.10957 3.48067 3.81132 3.91918 4.03980 4.17764 4.29951 4.37127 4.49951 4.53149 4.71831 4.80285 4.85627 4.95110 4.98516 5.02299 5.15569 5.26573 5.27987 5.31042 5.45940 5.48045 5.62566 6.12751 6.24413 6.52468 6.72783 6.82552 7.29624 8.85774 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.063036 B = 0.005428 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.083607 B = 5156.736668 C = 5330.251542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.170 3.830 3 O -0.566 6.566 4 C 0.038 3.962 5 N -0.687 5.687 6 C 0.087 3.913 7 C -0.004 4.004 8 C -0.535 4.535 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.954 3.046 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.250 1.250 16 C -0.191 4.191 17 C -0.174 4.174 18 C -0.165 4.165 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.382 0.618 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.343 0.657 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 2.866 22.296 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.129 3.871 3 O -0.374 6.374 4 C -0.091 4.091 5 N -0.319 5.319 6 C -0.042 4.042 7 C -0.042 4.042 8 C -0.573 4.573 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.777 3.223 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.173 1.173 16 C -0.210 4.210 17 C -0.210 4.210 18 C -0.202 4.202 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.231 0.769 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.162 0.838 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.639 2.665 22.121 22.341 hybrid contribution 1.346 0.293 -0.764 1.575 sum -0.293 2.959 21.357 21.563 Atomic orbital electron populations 1.21573 0.92262 1.02416 1.02022 1.20636 0.94971 0.81029 0.90486 1.86564 1.27479 1.26588 1.96772 1.22613 0.97246 0.98965 0.90312 1.60403 1.63769 1.06673 1.01042 1.21630 0.95832 0.97811 0.88914 1.19429 0.96725 0.95580 0.92448 1.21410 1.31732 1.12777 0.91403 0.94960 1.25985 0.97225 1.00692 0.95129 1.70059 1.47682 1.42865 0.98500 0.85607 0.79401 0.79092 0.78224 1.19059 1.20825 1.17327 1.22980 1.05958 0.99931 0.92086 1.23051 0.92695 1.02311 1.02985 1.22906 0.98113 1.03070 0.96136 0.92126 0.92559 0.90971 0.76872 0.94899 0.90530 0.83822 0.96640 0.92615 0.95996 0.96514 0.92389 0.86890 0.87797 0.88047 0.89165 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.53 71.98 0.61 -2.33 16 2 C 0.17 3.72 0.98 -10.79 -0.01 3.71 16 3 O -0.57 -12.64 11.47 -148.98 -1.71 -14.34 16 4 C 0.04 1.00 4.82 86.30 0.42 1.41 16 5 N -0.69 -22.67 5.74 -513.91 -2.95 -25.62 16 6 C 0.09 3.54 5.62 86.30 0.49 4.03 16 7 C 0.00 -0.19 4.30 29.85 0.13 -0.07 16 8 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 9 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 10 C 0.01 0.40 5.47 84.65 0.46 0.86 16 11 N -0.95 -60.45 13.96 21.45 0.30 -60.16 16 12 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 16 C -0.19 -3.33 5.15 -10.79 -0.06 -3.39 16 17 C -0.17 -2.53 9.74 30.59 0.30 -2.24 16 18 C -0.17 -2.57 9.67 30.60 0.30 -2.27 16 19 H 0.06 1.30 7.29 -2.39 -0.02 1.28 16 20 H 0.06 1.57 7.60 -2.39 -0.02 1.55 16 21 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.38 6.35 7.56 -74.06 -0.56 5.79 16 23 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.34 11.08 8.12 -89.69 -0.73 10.35 16 26 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 29 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 30 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.11 1.88 8.11 -2.39 -0.02 1.86 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.42 6.38 -2.39 -0.02 1.40 16 34 H 0.09 1.55 7.61 -2.39 -0.02 1.53 16 35 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -66.51 284.07 0.13 -66.38 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.28 Total: 18.10 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.88 Total: -31.65 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.65 Total: -85.77 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.71 Total: -14.34 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -66.51 0.13 -66.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308326292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.335 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds