Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47541 * 2 1 4 4 C 1.53004 * 109.46771 * 119.99807 * 2 1 3 5 5 N 1.46901 * 109.46916 * 304.99771 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47393 * 180.02562 * 7 6 5 9 9 H 1.08010 * 119.99765 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00736 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00590 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99710 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47209 * 89.99893 * 12 10 8 14 14 H 1.48500 * 109.47295 * 209.99804 * 12 10 8 15 15 H 1.48503 * 109.47210 * 329.99849 * 12 10 8 16 16 C 1.52999 * 109.47345 * 239.99383 * 2 1 3 17 17 C 1.53002 * 117.49652 * 128.62570 * 16 2 1 18 18 C 1.53001 * 117.49911 * 60.00270 * 16 2 1 19 19 H 1.08997 * 109.47075 * 300.00436 * 1 2 3 20 20 H 1.09004 * 109.46644 * 60.00295 * 1 2 3 21 21 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 22 22 H 0.96693 * 114.00429 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46889 * 185.00151 * 4 2 1 24 24 H 1.08995 * 109.47384 * 64.99792 * 4 2 1 25 25 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 26 26 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 27 27 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 28 28 H 1.09001 * 109.47393 * 299.99719 * 7 6 5 29 29 H 1.08998 * 109.47408 * 60.00073 * 7 6 5 30 30 H 0.97002 * 120.00416 * 179.97438 * 11 10 8 31 31 H 1.08996 * 115.55032 * 274.33466 * 16 2 1 32 32 H 1.08997 * 117.50259 * 0.02562 * 17 16 2 33 33 H 1.09004 * 117.49478 * 145.02408 * 17 16 2 34 34 H 1.08995 * 117.50227 * 214.97944 * 18 16 2 35 35 H 1.09001 * 117.49263 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4541 -0.1018 2.4456 6 6 1.9228 -0.7696 3.6673 7 6 1.2923 -0.0987 4.8892 8 6 1.7735 -0.7832 6.1425 9 1 2.4602 -1.6142 6.0743 10 6 1.3374 -0.3490 7.3762 11 7 1.7570 -0.9467 8.4699 12 14 0.1492 1.0877 7.4942 13 1 -1.2460 0.5806 7.4560 14 1 0.3769 1.8149 8.7688 15 1 0.3723 2.0097 6.3516 16 6 2.0400 -0.7214 -1.2491 17 6 3.0743 0.0050 -2.1115 18 6 1.6359 -0.1498 -2.6096 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 3.1263 -0.6443 1.2953 24 1 1.7515 -1.7714 1.2057 25 1 1.6533 0.8869 2.4753 26 1 1.6340 -1.8203 3.6406 27 1 3.0083 -0.6927 3.7298 28 1 1.5808 0.9521 4.9161 29 1 0.2069 -0.1760 4.8265 30 1 1.4504 -0.6409 9.3379 31 1 2.1267 -1.8045 -1.1640 32 1 3.3916 0.9965 -1.7888 33 1 3.8417 -0.6004 -2.5939 34 1 1.4570 -0.8568 -3.4196 35 1 1.0069 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308326293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -38.105634 kcal Electronic energy + Delta-G solvation = -14294.003574 eV Core-core repulsion = 11906.319602 eV Total energy + Delta-G solvation = -2387.683972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.46979 -36.03311 -34.84916 -32.90626 -31.33216 -29.31579 -26.09613 -23.97358 -22.46876 -21.94083 -20.52879 -19.81978 -17.05675 -16.69811 -16.11416 -15.47264 -14.63764 -14.25613 -13.99576 -13.30352 -13.19734 -12.69368 -12.53717 -12.22452 -12.11652 -11.86079 -11.46699 -11.23627 -11.05682 -10.93654 -10.67966 -10.25600 -10.20489 -10.02194 -9.76890 -9.49599 -9.20838 -8.51821 -7.90217 -6.02790 -4.01154 3.35045 3.41683 3.47373 3.57687 4.11296 4.42423 4.48341 4.72777 4.75290 4.87700 5.11037 5.25088 5.31509 5.32768 5.44557 5.66024 5.76366 5.85005 5.87679 5.95025 6.08656 6.12579 6.20902 6.30563 6.49426 6.79563 7.14612 7.41486 7.59730 7.63710 7.78693 7.95003 8.54812 9.01029 9.59798 11.10557 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.063578 B = 0.005421 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.301363 B = 5163.577192 C = 5345.801253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.162 3.838 3 O -0.556 6.556 4 C 0.039 3.961 5 N -0.688 5.688 6 C 0.073 3.927 7 C -0.010 4.010 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.905 5.905 12 Si 0.883 3.117 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.265 1.265 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.168 4.168 19 H 0.078 0.922 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.370 0.630 23 H 0.026 0.974 24 H 0.076 0.924 25 H 0.340 0.660 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.013 0.987 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 2.222 -20.421 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 O -0.362 6.362 4 C -0.092 4.092 5 N -0.319 5.319 6 C -0.055 4.055 7 C -0.047 4.047 8 C -0.560 4.560 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.544 5.544 12 Si 0.710 3.290 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.189 1.189 16 C -0.201 4.201 17 C -0.218 4.218 18 C -0.205 4.205 19 H 0.097 0.903 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.218 0.782 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.613 1.976 -20.250 20.356 hybrid contribution 1.039 0.712 0.268 1.287 sum 0.426 2.688 -19.982 20.167 Atomic orbital electron populations 1.21561 0.91587 1.02283 1.02683 1.20786 0.95477 0.81027 0.90617 1.86582 1.26250 1.26598 1.96803 1.22523 0.96164 0.99471 0.91001 1.60558 1.62055 1.07702 1.01594 1.21961 0.96426 0.98506 0.88603 1.19538 0.96552 0.95899 0.92753 1.21077 1.28364 1.17303 0.89238 0.91178 1.25004 0.96101 0.96645 0.95662 1.69915 1.45028 1.41613 0.97823 0.86730 0.81670 0.83178 0.77417 1.20223 1.21509 1.18944 1.23101 1.04535 0.99813 0.92647 1.22957 0.92654 1.02176 1.03989 1.22863 0.97887 1.03217 0.96521 0.90287 0.93037 0.91533 0.78206 0.95625 0.90573 0.84162 0.91878 0.96179 0.96849 0.96075 0.92737 0.87362 0.88370 0.89027 0.89112 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 8.47 37.16 0.31 -1.24 16 2 C 0.16 1.93 0.98 -90.62 -0.09 1.84 16 3 O -0.56 -6.76 11.65 -35.23 -0.41 -7.17 16 4 C 0.04 0.53 4.84 -3.82 -0.02 0.52 16 5 N -0.69 -11.77 5.52 -113.78 -0.63 -12.40 16 6 C 0.07 1.50 5.62 -3.82 -0.02 1.48 16 7 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 8 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 9 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 12 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 16 C -0.18 -1.81 5.15 -90.62 -0.47 -2.28 16 17 C -0.18 -1.57 9.74 -26.73 -0.26 -1.83 16 18 C -0.17 -1.52 9.67 -26.73 -0.26 -1.78 16 19 H 0.08 1.14 7.47 -51.93 -0.39 0.76 16 20 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.37 3.48 7.56 45.56 0.34 3.82 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.34 5.80 8.29 -39.29 -0.33 5.48 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 29 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.10 0.82 6.38 -51.93 -0.33 0.48 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.95 7.61 -51.93 -0.40 0.55 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.11 284.04 -7.21 -38.32 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.21 Total: 4.16 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.35 Total: -17.25 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.15 Total: -39.91 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.41 Total: -7.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.11 -7.21 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308326293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.218 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds