Wall clock time and date at job start Mon Mar 30 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47541 * 2 1 4 4 C 1.53004 * 109.46771 * 119.99807 * 2 1 3 5 5 N 1.46901 * 109.46916 * 304.99771 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47393 * 180.02562 * 7 6 5 9 9 H 1.08010 * 119.99765 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00736 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00590 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99710 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47209 * 89.99893 * 12 10 8 14 14 H 1.48500 * 109.47295 * 209.99804 * 12 10 8 15 15 H 1.48503 * 109.47210 * 329.99849 * 12 10 8 16 16 C 1.52999 * 109.47345 * 239.99383 * 2 1 3 17 17 C 1.53002 * 117.49652 * 128.62570 * 16 2 1 18 18 C 1.53001 * 117.49911 * 60.00270 * 16 2 1 19 19 H 1.08997 * 109.47075 * 300.00436 * 1 2 3 20 20 H 1.09004 * 109.46644 * 60.00295 * 1 2 3 21 21 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 22 22 H 0.96693 * 114.00429 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46889 * 185.00151 * 4 2 1 24 24 H 1.08995 * 109.47384 * 64.99792 * 4 2 1 25 25 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 26 26 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 27 27 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 28 28 H 1.09001 * 109.47393 * 299.99719 * 7 6 5 29 29 H 1.08998 * 109.47408 * 60.00073 * 7 6 5 30 30 H 0.97002 * 120.00416 * 179.97438 * 11 10 8 31 31 H 1.08996 * 115.55032 * 274.33466 * 16 2 1 32 32 H 1.08997 * 117.50259 * 0.02562 * 17 16 2 33 33 H 1.09004 * 117.49478 * 145.02408 * 17 16 2 34 34 H 1.08995 * 117.50227 * 214.97944 * 18 16 2 35 35 H 1.09001 * 117.49263 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4541 -0.1018 2.4456 6 6 1.9228 -0.7696 3.6673 7 6 1.2923 -0.0987 4.8892 8 6 1.7735 -0.7832 6.1425 9 1 2.4602 -1.6142 6.0743 10 6 1.3374 -0.3490 7.3762 11 7 1.7570 -0.9467 8.4699 12 14 0.1492 1.0877 7.4942 13 1 -1.2460 0.5806 7.4560 14 1 0.3769 1.8149 8.7688 15 1 0.3723 2.0097 6.3516 16 6 2.0400 -0.7214 -1.2491 17 6 3.0743 0.0050 -2.1115 18 6 1.6359 -0.1498 -2.6096 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 3.1263 -0.6443 1.2953 24 1 1.7515 -1.7714 1.2057 25 1 1.6533 0.8869 2.4753 26 1 1.6340 -1.8203 3.6406 27 1 3.0083 -0.6927 3.7298 28 1 1.5808 0.9521 4.9161 29 1 0.2069 -0.1760 4.8265 30 1 1.4504 -0.6409 9.3379 31 1 2.1267 -1.8045 -1.1640 32 1 3.3916 0.9965 -1.7888 33 1 3.8417 -0.6004 -2.5939 34 1 1.4570 -0.8568 -3.4196 35 1 1.0069 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308326293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:07 Heat of formation + Delta-G solvation = -60.695434 kcal Electronic energy + Delta-G solvation = -14294.983141 eV Core-core repulsion = 11906.319602 eV Total energy + Delta-G solvation = -2388.663539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37420 -37.34693 -35.89090 -34.87930 -32.79544 -30.88581 -27.44370 -25.56936 -23.17701 -23.02873 -22.32428 -20.79853 -18.96122 -17.87854 -17.18907 -16.66388 -16.31647 -15.65129 -15.22485 -14.86548 -14.55852 -14.42627 -13.74891 -13.54101 -13.15124 -13.01547 -12.92681 -12.69932 -12.23402 -12.03729 -11.91314 -11.83732 -11.69579 -11.42753 -11.39869 -10.95759 -10.77876 -10.65122 -9.30133 -8.30911 -6.35605 1.37471 1.38233 1.51362 2.36259 2.84619 3.04786 3.12449 3.46232 3.80640 3.91965 4.04420 4.18802 4.29746 4.37067 4.50070 4.52840 4.71722 4.80320 4.85445 4.95561 4.98919 5.02492 5.16760 5.26284 5.27887 5.31109 5.46772 5.49205 5.61819 6.12413 6.24315 6.51335 6.72748 6.82240 7.29611 8.85775 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.063578 B = 0.005421 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.301363 B = 5163.577192 C = 5345.801253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.169 3.831 3 O -0.567 6.567 4 C 0.038 3.962 5 N -0.686 5.686 6 C 0.087 3.913 7 C -0.004 4.004 8 C -0.535 4.535 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.954 3.046 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.249 1.249 16 C -0.190 4.190 17 C -0.173 4.173 18 C -0.166 4.166 19 H 0.057 0.943 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.382 0.618 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.343 0.657 26 H 0.056 0.944 27 H 0.015 0.985 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 3.343 -22.227 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 O -0.375 6.375 4 C -0.091 4.091 5 N -0.318 5.318 6 C -0.042 4.042 7 C -0.042 4.042 8 C -0.573 4.573 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.777 3.223 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.172 1.172 16 C -0.209 4.209 17 C -0.210 4.210 18 C -0.203 4.203 19 H 0.076 0.924 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.232 0.768 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.161 0.839 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.096 3.096 -22.085 22.328 hybrid contribution 1.257 0.300 0.806 1.523 sum 0.161 3.396 -21.279 21.549 Atomic orbital electron populations 1.21555 0.92206 1.02407 1.01990 1.20640 0.95011 0.80997 0.90526 1.86558 1.27521 1.26630 1.96798 1.22622 0.96521 0.99583 0.90392 1.60463 1.62317 1.07733 1.01270 1.21634 0.95749 0.97965 0.88881 1.19426 0.96507 0.95824 0.92423 1.21410 1.27728 1.16642 0.91550 0.94967 1.25985 0.98099 0.99829 0.95118 1.70059 1.46765 1.43654 0.98631 0.85600 0.79119 0.79458 0.78079 1.19221 1.20816 1.17241 1.22980 1.05970 0.99918 0.92074 1.23054 0.92698 1.02301 1.02966 1.22906 0.98126 1.03077 0.96146 0.92440 0.92206 0.91058 0.76831 0.94903 0.90499 0.83919 0.92575 0.96662 0.96414 0.96071 0.92388 0.86910 0.88024 0.87788 0.87809 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.47 71.98 0.61 -2.32 16 2 C 0.17 3.71 0.98 -10.79 -0.01 3.70 16 3 O -0.57 -12.62 11.65 -148.98 -1.74 -14.35 16 4 C 0.04 1.00 4.84 86.30 0.42 1.42 16 5 N -0.69 -22.60 5.52 -513.88 -2.84 -25.44 16 6 C 0.09 3.52 5.62 86.30 0.49 4.01 16 7 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 8 C -0.53 -31.61 9.66 25.60 0.25 -31.36 16 9 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 10 C 0.01 0.40 5.47 84.65 0.46 0.86 16 11 N -0.95 -60.45 13.96 21.44 0.30 -60.15 16 12 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 16 C -0.19 -3.34 5.15 -10.79 -0.06 -3.40 16 17 C -0.17 -2.53 9.74 30.60 0.30 -2.23 16 18 C -0.17 -2.58 9.67 30.60 0.30 -2.29 16 19 H 0.06 1.60 7.47 -2.39 -0.02 1.58 16 20 H 0.06 1.29 7.29 -2.38 -0.02 1.27 16 21 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.38 6.30 7.56 -74.06 -0.56 5.74 16 23 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.34 11.12 8.29 -89.69 -0.74 10.38 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.11 1.89 8.11 -2.39 -0.02 1.87 16 32 H 0.10 1.41 6.38 -2.39 -0.02 1.40 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.56 7.61 -2.39 -0.02 1.54 16 Total: -1.00 -66.37 284.04 0.20 -66.17 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.29 Total: 18.15 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 2.88 Total: -31.67 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.54 Total: -85.59 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.74 Total: -14.35 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -66.37 0.20 -66.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308326293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.478 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds