Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47176 * 2 1 4 4 N 1.46494 * 109.47460 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00318 * 272.57272 * 4 3 2 6 6 H 1.07996 * 120.00531 * 146.30807 * 5 4 3 7 7 C 1.38819 * 119.99893 * 326.31313 * 5 4 3 8 8 N 1.31618 * 119.99891 * 336.65173 * 7 5 4 9 9 Si 1.86796 * 120.00008 * 156.64410 * 7 5 4 10 10 H 1.48505 * 109.47159 * 90.00080 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.47625 * 330.00321 * 9 7 5 13 13 C 1.46495 * 119.99915 * 92.57377 * 4 3 2 14 14 C 1.53003 * 109.47297 * 269.99626 * 13 4 3 15 15 C 1.52996 * 109.47554 * 179.97438 * 14 13 4 16 16 O 1.42904 * 115.54834 * 39.33258 * 15 14 13 17 17 C 1.52997 * 117.50071 * 253.62650 * 15 14 13 18 18 C 1.52992 * 60.00066 * 252.50833 * 17 15 14 19 19 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47732 * 299.99956 * 1 2 3 21 21 H 1.08999 * 109.47332 * 60.00351 * 1 2 3 22 22 H 1.08998 * 109.47732 * 240.00044 * 2 1 3 23 23 H 1.08999 * 109.47332 * 119.99649 * 2 1 3 24 24 H 1.09009 * 109.46983 * 59.99864 * 3 2 1 25 25 H 1.09000 * 109.47108 * 300.00381 * 3 2 1 26 26 H 0.96997 * 120.00133 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47368 * 150.00463 * 13 4 3 28 28 H 1.09003 * 109.47338 * 30.00006 * 13 4 3 29 29 H 1.09009 * 109.46726 * 60.00193 * 14 13 4 30 30 H 1.08994 * 109.47379 * 300.00520 * 14 13 4 31 31 H 0.96701 * 113.99978 * 325.58533 * 16 15 14 32 32 H 1.09001 * 117.50138 * 0.02562 * 17 15 14 33 33 H 1.09006 * 117.49709 * 145.02021 * 17 15 14 34 34 H 1.09001 * 117.49909 * 252.51185 * 18 17 15 35 35 H 1.08997 * 117.52132 * 107.47942 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3896 1.1856 6 1 5.1331 0.8678 1.2413 7 6 3.6694 2.0064 2.3154 8 7 2.8100 2.9953 2.1887 9 14 4.1896 1.4330 4.0153 10 1 5.3851 2.1983 4.4516 11 1 3.0794 1.6595 4.9753 12 1 4.5178 -0.0146 3.9707 13 6 4.2379 1.4994 -1.2665 14 6 4.4933 0.0782 -1.7722 15 6 5.2582 0.1374 -3.0959 16 8 6.2739 1.1395 -3.1764 17 6 4.4839 -0.1886 -4.3745 18 6 5.5092 -1.1831 -3.8265 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 2.4471 3.4265 2.9781 27 1 5.1903 2.0069 -1.1129 28 1 3.6491 2.0467 -2.0027 29 1 3.5409 -0.4294 -1.9258 30 1 5.0820 -0.4691 -1.0361 31 1 6.0626 1.9530 -2.6981 32 1 3.4294 -0.4449 -4.2728 33 1 4.7491 0.3614 -5.2775 34 1 6.4489 -1.2874 -4.3690 35 1 5.1298 -2.0942 -3.3640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308427838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -16.208704 kcal Electronic energy + Delta-G solvation = -14812.898952 eV Core-core repulsion = 12426.164502 eV Total energy + Delta-G solvation = -2386.734450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -38.52447 -36.08175 -33.78914 -32.43235 -31.75538 -28.79431 -25.55096 -24.07338 -22.29858 -21.35406 -20.04040 -19.82525 -16.88207 -16.53405 -15.19583 -14.47299 -14.24378 -14.15895 -13.94300 -13.10291 -13.02709 -12.60226 -12.35795 -11.67364 -11.38990 -11.33355 -11.29400 -11.04823 -10.87378 -10.73273 -10.50327 -10.30313 -10.13026 -9.88618 -9.69839 -9.41693 -8.91627 -8.47334 -6.61448 -5.77568 -3.33686 3.35462 3.43370 3.47093 3.96689 4.31280 4.46281 4.90396 5.15160 5.30996 5.41929 5.55894 5.77380 5.83796 5.88251 5.97389 6.01729 6.05627 6.26645 6.29169 6.31116 6.36498 6.53737 6.62742 6.75396 6.83282 6.94904 7.01347 7.29055 7.76753 7.84395 7.92153 8.49852 9.18712 9.82502 10.37870 11.20734 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.009245 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.729038 B = 3028.017163 C = 3611.325601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.140 3.860 4 N -0.583 5.583 5 C -0.258 4.258 6 H 0.061 0.939 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.144 3.856 14 C -0.128 4.128 15 C 0.070 3.930 16 O -0.539 6.539 17 C -0.204 4.204 18 C -0.171 4.171 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.020 0.980 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.385 0.615 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -5.093 -7.970 9.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.014 3.986 4 N -0.303 5.303 5 C -0.388 4.388 6 H 0.079 0.921 7 C -0.191 4.191 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.017 3.983 14 C -0.168 4.168 15 C 0.028 3.972 16 O -0.347 6.347 17 C -0.242 4.242 18 C -0.208 4.208 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.129 -5.396 -8.180 9.800 hybrid contribution -0.047 -0.004 1.142 1.143 sum -0.176 -5.400 -7.038 8.873 Atomic orbital electron populations 1.21705 0.97675 0.99881 1.01061 1.22136 0.93539 1.01734 1.00566 1.21096 0.83296 0.92521 1.01718 1.43780 1.01014 1.84971 1.00505 1.19014 1.05576 1.27632 0.86530 0.92135 1.25056 0.99860 0.95398 0.98744 1.69975 1.33636 1.20823 1.28508 0.86426 0.77753 0.78910 0.84488 1.21293 1.21494 1.20396 1.20795 0.96172 0.92269 0.89076 1.22356 0.98993 1.02593 0.92841 1.21648 0.91999 0.90746 0.92762 1.86323 1.43376 1.28042 1.76976 1.23577 0.97463 1.03954 0.99190 1.23167 1.00650 0.93313 1.03654 0.94229 0.93066 0.93708 0.94113 0.92523 0.88271 0.96158 0.93579 0.93438 0.94641 0.91229 0.91163 0.76450 0.88647 0.88901 0.88816 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.15 0.37 -2.08 16 2 C -0.14 -2.80 6.25 -26.73 -0.17 -2.97 16 3 C 0.14 3.23 5.36 -4.04 -0.02 3.21 16 4 N -0.58 -14.11 2.46 -173.23 -0.43 -14.54 16 5 C -0.26 -6.91 9.48 -15.06 -0.14 -7.06 16 6 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.25 4.97 -17.43 -0.09 0.17 16 8 N -0.89 -25.16 11.29 55.49 0.63 -24.54 16 9 Si 0.89 21.41 29.61 -169.99 -5.03 16.38 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.14 2.90 5.03 -4.04 -0.02 2.88 16 14 C -0.13 -2.26 5.77 -26.73 -0.15 -2.42 16 15 C 0.07 1.12 3.13 -90.62 -0.28 0.84 16 16 O -0.54 -8.92 13.83 -35.23 -0.49 -9.41 16 17 C -0.20 -2.83 10.12 -26.74 -0.27 -3.10 16 18 C -0.17 -2.37 10.20 -26.74 -0.27 -2.65 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.77 6.44 -51.93 -0.33 0.43 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.10 2.62 5.30 -51.92 -0.28 2.34 16 25 H 0.02 0.44 7.86 -51.93 -0.41 0.04 16 26 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 27 H 0.05 0.96 6.59 -51.93 -0.34 0.61 16 28 H 0.04 0.68 7.87 -51.93 -0.41 0.28 16 29 H 0.07 1.22 6.24 -51.92 -0.32 0.90 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.38 5.61 6.65 45.56 0.30 5.91 16 32 H 0.10 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 285.12 15.07 4.30 4.30 Total: -1.00 -28.67 285.12 -7.22 -35.88 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.14 Total: 5.11 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.05 Total: -13.18 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.20 Total: -39.08 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.49 Total: -9.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.67 -7.22 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308427838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.674 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds