Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47176 * 2 1 4 4 N 1.46494 * 109.47460 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00318 * 272.57272 * 4 3 2 6 6 H 1.07996 * 120.00531 * 146.30807 * 5 4 3 7 7 C 1.38819 * 119.99893 * 326.31313 * 5 4 3 8 8 N 1.31618 * 119.99891 * 336.65173 * 7 5 4 9 9 Si 1.86796 * 120.00008 * 156.64410 * 7 5 4 10 10 H 1.48505 * 109.47159 * 90.00080 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.47625 * 330.00321 * 9 7 5 13 13 C 1.46495 * 119.99915 * 92.57377 * 4 3 2 14 14 C 1.53003 * 109.47297 * 269.99626 * 13 4 3 15 15 C 1.52996 * 109.47554 * 179.97438 * 14 13 4 16 16 O 1.42904 * 115.54834 * 39.33258 * 15 14 13 17 17 C 1.52997 * 117.50071 * 253.62650 * 15 14 13 18 18 C 1.52992 * 60.00066 * 252.50833 * 17 15 14 19 19 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47732 * 299.99956 * 1 2 3 21 21 H 1.08999 * 109.47332 * 60.00351 * 1 2 3 22 22 H 1.08998 * 109.47732 * 240.00044 * 2 1 3 23 23 H 1.08999 * 109.47332 * 119.99649 * 2 1 3 24 24 H 1.09009 * 109.46983 * 59.99864 * 3 2 1 25 25 H 1.09000 * 109.47108 * 300.00381 * 3 2 1 26 26 H 0.96997 * 120.00133 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47368 * 150.00463 * 13 4 3 28 28 H 1.09003 * 109.47338 * 30.00006 * 13 4 3 29 29 H 1.09009 * 109.46726 * 60.00193 * 14 13 4 30 30 H 1.08994 * 109.47379 * 300.00520 * 14 13 4 31 31 H 0.96701 * 113.99978 * 325.58533 * 16 15 14 32 32 H 1.09001 * 117.50138 * 0.02562 * 17 15 14 33 33 H 1.09006 * 117.49709 * 145.02021 * 17 15 14 34 34 H 1.09001 * 117.49909 * 252.51185 * 18 17 15 35 35 H 1.08997 * 117.52132 * 107.47942 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3896 1.1856 6 1 5.1331 0.8678 1.2413 7 6 3.6694 2.0064 2.3154 8 7 2.8100 2.9953 2.1887 9 14 4.1896 1.4330 4.0153 10 1 5.3851 2.1983 4.4516 11 1 3.0794 1.6595 4.9753 12 1 4.5178 -0.0146 3.9707 13 6 4.2379 1.4994 -1.2665 14 6 4.4933 0.0782 -1.7722 15 6 5.2582 0.1374 -3.0959 16 8 6.2739 1.1395 -3.1764 17 6 4.4839 -0.1886 -4.3745 18 6 5.5092 -1.1831 -3.8265 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 2.4471 3.4265 2.9781 27 1 5.1903 2.0069 -1.1129 28 1 3.6491 2.0467 -2.0027 29 1 3.5409 -0.4294 -1.9258 30 1 5.0820 -0.4691 -1.0361 31 1 6.0626 1.9530 -2.6981 32 1 3.4294 -0.4449 -4.2728 33 1 4.7491 0.3614 -5.2775 34 1 6.4489 -1.2874 -4.3690 35 1 5.1298 -2.0942 -3.3640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308427838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -33.666177 kcal Electronic energy + Delta-G solvation = -14813.655964 eV Core-core repulsion = 12426.164502 eV Total energy + Delta-G solvation = -2387.491463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80795 -37.83412 -35.00336 -34.12550 -33.57979 -30.45956 -27.38055 -25.74049 -23.42733 -22.87976 -21.80568 -21.15874 -18.73709 -17.94012 -16.92524 -16.16137 -15.81037 -15.57795 -15.35065 -14.79000 -14.56470 -14.19601 -13.68747 -13.24904 -13.10816 -12.89683 -12.74205 -12.50648 -12.45670 -12.35775 -12.17466 -11.99318 -11.75686 -11.46859 -11.39337 -11.08187 -10.46970 -10.12089 -8.58942 -7.80041 -5.40515 1.44212 1.47563 1.56510 2.50532 2.82022 3.14224 3.22837 3.50746 3.93050 4.04084 4.14339 4.35993 4.45071 4.50555 4.67522 4.72779 4.74635 4.81355 4.88898 4.94080 4.99450 5.11065 5.22678 5.26585 5.28775 5.36571 5.46173 5.58397 5.69135 5.93724 6.46906 6.71572 7.17855 7.89037 8.38310 9.13576 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.009245 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.729038 B = 3028.017163 C = 3611.325601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.139 3.861 4 N -0.600 5.600 5 C -0.263 4.263 6 H 0.054 0.946 7 C -0.038 4.038 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.143 3.857 14 C -0.108 4.108 15 C 0.045 3.955 16 O -0.550 6.550 17 C -0.189 4.189 18 C -0.162 4.162 19 H 0.063 0.937 20 H 0.040 0.960 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.251 0.749 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.389 0.611 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -6.307 -9.085 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.013 3.987 4 N -0.320 5.320 5 C -0.394 4.394 6 H 0.072 0.928 7 C -0.235 4.235 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 C 0.017 3.983 14 C -0.148 4.148 15 C 0.003 3.997 16 O -0.359 6.359 17 C -0.227 4.227 18 C -0.199 4.199 19 H 0.082 0.918 20 H 0.059 0.941 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.241 0.759 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.376 -6.623 -9.317 11.437 hybrid contribution 0.055 0.389 1.415 1.469 sum -0.321 -6.234 -7.902 10.070 Atomic orbital electron populations 1.21646 0.95085 1.01590 1.01351 1.21961 0.95768 0.99188 0.99965 1.21035 0.82950 0.94275 1.00393 1.44001 1.01622 1.85316 1.01106 1.19183 1.05421 1.26837 0.87923 0.92846 1.25687 1.00470 0.95680 1.01637 1.70095 1.34981 1.21931 1.28948 0.85532 0.77207 0.78468 0.80790 1.21079 1.21633 1.19996 1.20879 0.95604 0.94049 0.87729 1.22029 0.99094 1.00202 0.93465 1.21653 0.93070 0.92247 0.92736 1.86306 1.43987 1.28485 1.77158 1.23636 0.98004 1.03096 0.97937 1.23291 1.01120 0.92847 1.02648 0.91787 0.94060 0.92177 0.92763 0.94935 0.91532 0.95464 0.93945 0.94014 0.93670 0.90808 0.93217 0.75946 0.87534 0.88077 0.88160 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.91 71.98 0.71 -3.68 16 2 C -0.13 -5.03 6.25 30.59 0.19 -4.84 16 3 C 0.14 6.43 5.36 86.38 0.46 6.89 16 4 N -0.60 -29.13 2.46 -701.99 -1.72 -30.86 16 5 C -0.26 -14.27 9.48 84.04 0.80 -13.47 16 6 H 0.05 2.91 7.93 -2.91 -0.02 2.89 16 7 C -0.04 -2.07 4.97 84.86 0.42 -1.65 16 8 N -0.92 -52.87 11.29 21.65 0.24 -52.63 16 9 Si 0.95 44.49 29.61 68.60 2.03 46.52 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.14 5.72 5.03 86.38 0.43 6.15 16 14 C -0.11 -3.70 5.77 30.59 0.18 -3.53 16 15 C 0.04 1.34 3.13 -10.80 -0.03 1.30 16 16 O -0.55 -17.57 13.83 -148.98 -2.06 -19.63 16 17 C -0.19 -4.67 10.12 30.59 0.31 -4.36 16 18 C -0.16 -4.06 10.20 30.59 0.31 -3.75 16 19 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 1.94 6.44 -2.39 -0.02 1.93 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 3.58 5.30 -2.38 -0.01 3.57 16 25 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.04 1.69 6.59 -2.38 -0.02 1.67 16 28 H 0.04 1.70 7.87 -2.39 -0.02 1.68 16 29 H 0.07 2.45 6.24 -2.38 -0.01 2.43 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.39 11.17 6.65 -74.06 -0.49 10.67 16 32 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 33 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -60.55 285.12 2.84 -57.71 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.56 Total: 19.82 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.78 Total: -20.93 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.48 Total: -83.49 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -2.06 Total: -19.63 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.55 2.84 -57.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308427838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.039 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds