Wall clock time and date at job start Mon Mar 30 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 N 1.46502 * 109.47081 * 183.92970 * 3 2 1 5 5 C 1.36934 * 119.99482 * 94.74062 * 4 3 2 6 6 H 1.08007 * 119.99546 * 209.85538 * 5 4 3 7 7 C 1.38808 * 120.00635 * 29.85128 * 5 4 3 8 8 N 1.31617 * 120.00150 * 218.59957 * 7 5 4 9 9 Si 1.86800 * 119.99917 * 38.60031 * 7 5 4 10 10 H 1.48497 * 109.47304 * 90.08819 * 9 7 5 11 11 H 1.48501 * 109.47339 * 210.09063 * 9 7 5 12 12 H 1.48498 * 109.46850 * 330.08814 * 9 7 5 13 13 C 1.46493 * 120.00124 * 274.73426 * 4 3 2 14 14 H 1.08997 * 110.45906 * 359.13333 * 13 4 3 15 15 C 1.54509 * 110.51598 * 236.52296 * 13 4 3 16 16 C 1.54476 * 104.06548 * 241.36093 * 15 13 4 17 17 O 1.44428 * 104.80381 * 23.97536 * 16 15 13 18 18 C 1.44782 * 105.29277 * 319.45531 * 17 16 15 19 19 H 1.09008 * 110.42957 * 281.77562 * 18 17 16 20 20 C 1.53001 * 110.48683 * 159.32728 * 18 17 16 21 21 H 1.08999 * 109.47163 * 184.78060 * 1 2 3 22 22 H 1.09000 * 109.47383 * 304.77963 * 1 2 3 23 23 H 1.09003 * 109.46846 * 64.77944 * 1 2 3 24 24 H 1.09003 * 109.47612 * 239.99778 * 2 1 3 25 25 H 1.08999 * 109.47131 * 119.99919 * 2 1 3 26 26 H 1.08997 * 109.46745 * 303.93280 * 3 2 1 27 27 H 1.08995 * 109.47073 * 63.93249 * 3 2 1 28 28 H 0.97007 * 120.00032 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.50709 * 0.02562 * 15 13 4 30 30 H 1.08998 * 110.51127 * 122.57093 * 15 13 4 31 31 H 1.08996 * 110.37153 * 142.81007 * 16 15 13 32 32 H 1.09004 * 110.36903 * 265.03234 * 16 15 13 33 33 H 1.08998 * 109.46779 * 310.56216 * 20 18 17 34 34 H 1.09002 * 109.47399 * 70.55362 * 20 18 17 35 35 H 1.08996 * 109.47688 * 190.55672 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5020 1.4435 -0.0947 5 6 4.1088 1.5690 -1.3158 6 1 5.0725 1.1132 -1.4892 7 6 3.4855 2.2819 -2.3307 8 7 3.5558 1.8551 -3.5737 9 14 2.5470 3.8471 -1.9323 10 1 3.4652 5.0108 -2.0199 11 1 1.4362 4.0189 -2.9028 12 1 1.9933 3.7558 -0.5574 13 6 4.3145 1.3105 1.1170 14 1 3.6764 1.2369 1.9975 15 6 5.2864 2.5042 1.2510 16 6 6.6871 1.8540 1.2125 17 8 6.4944 0.6031 0.5167 18 6 5.2405 0.0782 1.0151 19 1 5.3806 -0.3735 1.9972 20 6 4.6607 -0.9441 0.0354 21 1 -0.3633 -1.0241 0.0856 22 1 -0.3634 0.5862 0.8441 23 1 -0.3633 0.4379 -0.9297 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6203 1.9762 -0.8526 27 1 1.7354 1.9356 0.9231 28 1 3.1199 2.3531 -4.2830 29 1 5.1619 3.1935 0.4159 30 1 5.1286 3.0207 2.1977 31 1 7.3851 2.4884 0.6663 32 1 7.0503 1.6751 2.2246 33 1 4.6612 -0.5240 -0.9705 34 1 5.2690 -1.8484 0.0515 35 1 3.6392 -1.1880 0.3269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308443397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:28 Heat of formation + Delta-G solvation = -19.882707 kcal Electronic energy + Delta-G solvation = -15705.061698 eV Core-core repulsion = 13318.167931 eV Total energy + Delta-G solvation = -2386.893767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.00792 -35.82216 -32.58169 -31.73521 -30.61828 -29.45128 -25.59976 -25.38446 -22.44123 -21.25611 -20.94641 -19.14428 -16.78473 -15.51646 -15.30453 -14.72275 -14.50912 -14.21906 -13.67879 -13.17576 -12.80112 -12.47777 -12.02121 -11.70824 -11.46795 -11.26389 -11.12084 -10.86904 -10.74230 -10.48449 -10.41490 -10.25813 -10.00352 -9.83975 -9.66591 -9.22933 -8.96410 -8.30907 -6.83876 -6.02977 -3.17813 3.39775 3.52213 3.57235 4.59954 4.65717 4.88989 5.26332 5.50827 5.64934 5.70060 5.71071 5.81317 5.83495 5.96226 6.11241 6.16534 6.22809 6.28268 6.35309 6.43833 6.53357 6.61006 6.64331 6.73705 6.81891 6.95459 6.99926 7.16740 7.44436 7.70494 8.05588 8.46957 9.08309 9.81679 10.20647 11.11897 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.015733 C = 0.012210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.073611 B = 1779.220920 C = 2292.605116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.150 3.850 4 N -0.589 5.589 5 C -0.267 4.267 6 H 0.096 0.904 7 C 0.046 3.954 8 N -0.872 5.872 9 Si 0.827 3.173 10 H -0.294 1.294 11 H -0.297 1.297 12 H -0.264 1.264 13 C 0.148 3.852 14 H 0.063 0.937 15 C -0.169 4.169 16 C 0.052 3.948 17 O -0.368 6.368 18 C 0.062 3.938 19 H 0.046 0.954 20 C -0.144 4.144 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.028 0.972 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -1.722 9.735 9.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.024 3.976 4 N -0.309 5.309 5 C -0.394 4.394 6 H 0.113 0.887 7 C -0.155 4.155 8 N -0.511 5.511 9 Si 0.654 3.346 10 H -0.222 1.222 11 H -0.224 1.224 12 H -0.188 1.188 13 C 0.039 3.961 14 H 0.081 0.919 15 C -0.208 4.208 16 C -0.025 4.025 17 O -0.287 6.287 18 C 0.003 3.997 19 H 0.064 0.936 20 C -0.201 4.201 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.986 -1.809 9.364 9.588 hybrid contribution -0.647 1.280 0.334 1.472 sum -1.633 -0.530 9.699 9.849 Atomic orbital electron populations 1.21744 0.97497 1.00390 1.01055 1.22210 0.93734 1.00611 1.01717 1.21209 0.84001 0.93659 0.98707 1.44232 0.99832 1.84256 1.02562 1.18792 1.06467 1.28378 0.85727 0.88682 1.25311 0.97184 0.98348 0.94686 1.70149 1.43427 1.36738 1.00794 0.87742 0.79362 0.88860 0.78645 1.22178 1.22367 1.18845 1.21734 0.92224 0.92255 0.89855 0.91912 1.23382 0.95368 1.00308 1.01747 1.23139 0.97403 0.86496 0.95462 1.89182 1.39976 1.35118 1.64441 1.23458 0.84557 0.96029 0.95703 0.93649 1.21988 0.98801 0.95826 1.03489 0.93665 0.93698 0.93096 0.91019 0.93328 0.92446 0.95244 0.92897 0.89351 0.92468 0.90267 0.94057 0.87760 0.95259 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.14 -2.63 4.95 -26.73 -0.13 -2.76 16 3 C 0.15 3.15 3.98 -4.04 -0.02 3.13 16 4 N -0.59 -13.18 1.40 -163.89 -0.23 -13.41 16 5 C -0.27 -7.01 6.79 -15.06 -0.10 -7.11 16 6 H 0.10 2.77 5.90 -52.48 -0.31 2.46 16 7 C 0.05 1.28 4.96 -17.43 -0.09 1.19 16 8 N -0.87 -25.77 13.97 55.49 0.78 -25.00 16 9 Si 0.83 20.86 26.34 -169.99 -4.48 16.38 16 10 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 12 H -0.26 -6.33 5.78 56.52 0.33 -6.00 16 13 C 0.15 2.87 3.50 -66.37 -0.23 2.64 16 14 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 15 C -0.17 -3.10 6.54 -25.16 -0.16 -3.26 16 16 C 0.05 0.91 7.63 37.93 0.29 1.20 16 17 O -0.37 -7.66 10.58 -35.23 -0.37 -8.03 16 18 C 0.06 1.18 3.58 -25.95 -0.09 1.09 16 19 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 20 C -0.14 -2.85 8.63 37.16 0.32 -2.53 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.48 7.98 -51.93 -0.41 1.07 16 25 H 0.05 0.83 7.10 -51.93 -0.37 0.46 16 26 H 0.06 1.33 4.04 -51.93 -0.21 1.12 16 27 H 0.03 0.57 8.04 -51.93 -0.42 0.16 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.88 7.33 -51.93 -0.38 1.50 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 2.48 4.98 -51.93 -0.26 2.22 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.18 5.41 -51.93 -0.28 0.90 16 LS Contribution 264.90 15.07 3.99 3.99 Total: -1.00 -28.65 264.90 -5.80 -34.45 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.64 Total: -0.01 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.15 Total: -8.37 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.55 Total: -38.41 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.37 Total: -8.03 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.48 Total: 16.38 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.65 -5.80 -34.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.568 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds