Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 N 1.46502 * 109.47081 * 183.92970 * 3 2 1 5 5 C 1.36934 * 119.99482 * 94.74062 * 4 3 2 6 6 H 1.08007 * 119.99546 * 209.85538 * 5 4 3 7 7 C 1.38808 * 120.00635 * 29.85128 * 5 4 3 8 8 N 1.31617 * 120.00150 * 218.59957 * 7 5 4 9 9 Si 1.86800 * 119.99917 * 38.60031 * 7 5 4 10 10 H 1.48497 * 109.47304 * 90.08819 * 9 7 5 11 11 H 1.48501 * 109.47339 * 210.09063 * 9 7 5 12 12 H 1.48498 * 109.46850 * 330.08814 * 9 7 5 13 13 C 1.46493 * 120.00124 * 274.73426 * 4 3 2 14 14 H 1.08997 * 110.45906 * 359.13333 * 13 4 3 15 15 C 1.54509 * 110.51598 * 236.52296 * 13 4 3 16 16 C 1.54476 * 104.06548 * 241.36093 * 15 13 4 17 17 O 1.44428 * 104.80381 * 23.97536 * 16 15 13 18 18 C 1.44782 * 105.29277 * 319.45531 * 17 16 15 19 19 H 1.09008 * 110.42957 * 281.77562 * 18 17 16 20 20 C 1.53001 * 110.48683 * 159.32728 * 18 17 16 21 21 H 1.08999 * 109.47163 * 184.78060 * 1 2 3 22 22 H 1.09000 * 109.47383 * 304.77963 * 1 2 3 23 23 H 1.09003 * 109.46846 * 64.77944 * 1 2 3 24 24 H 1.09003 * 109.47612 * 239.99778 * 2 1 3 25 25 H 1.08999 * 109.47131 * 119.99919 * 2 1 3 26 26 H 1.08997 * 109.46745 * 303.93280 * 3 2 1 27 27 H 1.08995 * 109.47073 * 63.93249 * 3 2 1 28 28 H 0.97007 * 120.00032 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.50709 * 0.02562 * 15 13 4 30 30 H 1.08998 * 110.51127 * 122.57093 * 15 13 4 31 31 H 1.08996 * 110.37153 * 142.81007 * 16 15 13 32 32 H 1.09004 * 110.36903 * 265.03234 * 16 15 13 33 33 H 1.08998 * 109.46779 * 310.56216 * 20 18 17 34 34 H 1.09002 * 109.47399 * 70.55362 * 20 18 17 35 35 H 1.08996 * 109.47688 * 190.55672 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5020 1.4435 -0.0947 5 6 4.1088 1.5690 -1.3158 6 1 5.0725 1.1132 -1.4892 7 6 3.4855 2.2819 -2.3307 8 7 3.5558 1.8551 -3.5737 9 14 2.5470 3.8471 -1.9323 10 1 3.4652 5.0108 -2.0199 11 1 1.4362 4.0189 -2.9028 12 1 1.9933 3.7558 -0.5574 13 6 4.3145 1.3105 1.1170 14 1 3.6764 1.2369 1.9975 15 6 5.2864 2.5042 1.2510 16 6 6.6871 1.8540 1.2125 17 8 6.4944 0.6031 0.5167 18 6 5.2405 0.0782 1.0151 19 1 5.3806 -0.3735 1.9972 20 6 4.6607 -0.9441 0.0354 21 1 -0.3633 -1.0241 0.0856 22 1 -0.3634 0.5862 0.8441 23 1 -0.3633 0.4379 -0.9297 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6203 1.9762 -0.8526 27 1 1.7354 1.9356 0.9231 28 1 3.1199 2.3531 -4.2830 29 1 5.1619 3.1935 0.4159 30 1 5.1286 3.0207 2.1977 31 1 7.3851 2.4884 0.6663 32 1 7.0503 1.6751 2.2246 33 1 4.6612 -0.5240 -0.9705 34 1 5.2690 -1.8484 0.0515 35 1 3.6392 -1.1880 0.3269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308443397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = -37.937966 kcal Electronic energy + Delta-G solvation = -15705.844632 eV Core-core repulsion = 13318.167931 eV Total energy + Delta-G solvation = -2387.676701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.55424 -37.48873 -34.25469 -33.56198 -32.11482 -31.10274 -27.40994 -26.87012 -24.18436 -22.73083 -22.44715 -20.81903 -18.62946 -17.17317 -17.03991 -16.33098 -16.14097 -15.70796 -15.28433 -14.80463 -14.55937 -14.14682 -13.75664 -13.16942 -13.09905 -12.88499 -12.72198 -12.60615 -12.35157 -12.09308 -12.04403 -11.86239 -11.53517 -11.41838 -11.35102 -11.00140 -10.51160 -10.36993 -8.70551 -8.15117 -5.24348 1.35833 1.47175 1.51433 2.52305 2.98926 3.23882 3.43082 4.02309 4.20261 4.25223 4.37345 4.38456 4.45801 4.57071 4.66208 4.74011 4.76600 4.85535 4.89460 4.96958 5.09027 5.14947 5.21207 5.25603 5.30874 5.43651 5.48674 5.63122 5.79545 6.01094 6.22717 6.40249 7.10742 7.82810 8.20679 9.04399 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.015733 C = 0.012210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.073611 B = 1779.220920 C = 2292.605116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.142 3.858 4 N -0.597 5.597 5 C -0.227 4.227 6 H 0.058 0.942 7 C -0.013 4.013 8 N -0.926 5.926 9 Si 0.886 3.114 10 H -0.307 1.307 11 H -0.307 1.307 12 H -0.239 1.239 13 C 0.139 3.861 14 H 0.096 0.904 15 C -0.166 4.166 16 C 0.050 3.950 17 O -0.402 6.402 18 C 0.061 3.939 19 H 0.081 0.919 20 C -0.137 4.137 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -1.760 13.184 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.017 3.983 4 N -0.318 5.318 5 C -0.356 4.356 6 H 0.076 0.924 7 C -0.209 4.209 8 N -0.570 5.570 9 Si 0.715 3.285 10 H -0.236 1.236 11 H -0.235 1.235 12 H -0.162 1.162 13 C 0.031 3.969 14 H 0.114 0.886 15 C -0.205 4.205 16 C -0.027 4.027 17 O -0.322 6.322 18 C 0.002 3.998 19 H 0.099 0.901 20 C -0.194 4.194 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.761 -1.839 12.876 13.125 hybrid contribution -0.330 1.193 -0.658 1.402 sum -2.091 -0.646 12.218 12.412 Atomic orbital electron populations 1.21703 0.95147 1.02053 1.01310 1.22042 0.95762 0.98502 1.00969 1.21333 0.82910 0.95297 0.98731 1.44312 1.00850 1.84205 1.02397 1.18529 1.04498 1.25437 0.87161 0.92442 1.25733 0.99634 1.00938 0.94623 1.70247 1.46770 1.38145 1.01830 0.86784 0.77563 0.84925 0.79270 1.23638 1.23467 1.16221 1.22036 0.92669 0.92795 0.89361 0.88554 1.23347 0.95671 0.99361 1.02142 1.23330 0.97033 0.85213 0.97076 1.89158 1.40669 1.36582 1.65827 1.23566 0.83902 0.95622 0.96698 0.90088 1.21849 0.99960 0.96502 1.01076 0.91658 0.91648 0.94348 0.94399 0.91364 0.95054 0.92624 0.93421 0.92967 0.88819 0.90470 0.90322 0.92580 0.94120 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.91 71.98 0.71 -3.37 16 2 C -0.13 -4.60 4.95 30.59 0.15 -4.45 16 3 C 0.14 5.65 3.98 86.38 0.34 6.00 16 4 N -0.60 -25.95 1.40 -672.43 -0.94 -26.89 16 5 C -0.23 -12.21 6.79 84.03 0.57 -11.64 16 6 H 0.06 3.52 5.90 -2.91 -0.02 3.50 16 7 C -0.01 -0.72 4.96 84.86 0.42 -0.30 16 8 N -0.93 -57.48 13.97 21.65 0.30 -57.18 16 9 Si 0.89 44.27 26.34 68.60 1.81 46.08 16 10 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 11 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 12 H -0.24 -10.78 5.78 99.48 0.57 -10.21 16 13 C 0.14 4.94 3.50 46.01 0.16 5.10 16 14 H 0.10 2.83 7.91 -2.39 -0.02 2.81 16 15 C -0.17 -5.61 6.54 31.61 0.21 -5.40 16 16 C 0.05 1.62 7.63 72.48 0.55 2.17 16 17 O -0.40 -16.21 10.58 -148.98 -1.58 -17.79 16 18 C 0.06 2.16 3.58 31.10 0.11 2.28 16 19 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 20 C -0.14 -5.29 8.63 71.98 0.62 -4.67 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.55 7.98 -2.39 -0.02 1.53 16 25 H 0.07 2.08 7.10 -2.39 -0.02 2.06 16 26 H 0.03 1.41 4.04 -2.39 -0.01 1.40 16 27 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 28 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 29 H 0.05 2.15 7.33 -2.39 -0.02 2.13 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.73 4.98 -2.39 -0.01 2.72 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 2.64 5.41 -2.39 -0.01 2.63 16 Total: -1.00 -64.58 264.90 4.36 -60.22 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.92 Total: 9.85 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.85 Total: -14.29 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -0.64 Total: -84.07 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.58 Total: -17.79 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.81 Total: 46.08 kcal Total: -64.58 4.36 -60.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.281 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds