Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47007 * 2 1 4 4 N 1.46501 * 109.47115 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99701 * 95.60207 * 4 3 2 6 6 H 1.07998 * 120.00163 * 210.83279 * 5 4 3 7 7 C 1.38819 * 120.00050 * 30.83984 * 5 4 3 8 8 N 1.31614 * 120.00205 * 26.36731 * 7 5 4 9 9 Si 1.86794 * 119.99826 * 206.37373 * 7 5 4 10 10 H 1.48497 * 109.47390 * 59.99557 * 9 7 5 11 11 H 1.48498 * 109.47200 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47110 * 299.99596 * 9 7 5 13 13 C 1.46500 * 120.00041 * 275.59996 * 4 3 2 14 14 H 1.09000 * 110.45584 * 2.60667 * 13 4 3 15 15 C 1.54507 * 110.50770 * 125.35780 * 13 4 3 16 16 C 1.54486 * 104.06057 * 118.64460 * 15 13 4 17 17 O 1.44420 * 104.80110 * 336.02034 * 16 15 13 18 18 C 1.44429 * 105.27764 * 40.51400 * 17 16 15 19 19 H 1.09001 * 110.37209 * 78.31603 * 18 17 16 20 20 C 1.52994 * 110.46633 * 200.60702 * 18 17 16 21 21 H 1.08995 * 109.47322 * 59.99518 * 1 2 3 22 22 H 1.09005 * 109.47073 * 299.99648 * 1 2 3 23 23 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47707 * 119.99810 * 2 1 3 25 25 H 1.08995 * 109.47139 * 240.00540 * 2 1 3 26 26 H 1.08995 * 109.47109 * 300.00792 * 3 2 1 27 27 H 1.09005 * 109.46917 * 60.00256 * 3 2 1 28 28 H 0.97000 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.08995 * 110.51403 * 237.28800 * 15 13 4 30 30 H 1.09003 * 110.51386 * 0.02562 * 15 13 4 31 31 H 1.09002 * 110.36961 * 217.18918 * 16 15 13 32 32 H 1.09003 * 110.46426 * 94.90132 * 16 15 13 33 33 H 1.08995 * 109.47488 * 175.43053 * 20 18 17 34 34 H 1.09003 * 109.47242 * 295.43656 * 20 18 17 35 35 H 1.09004 * 109.47639 * 55.43053 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1891 1.5586 -1.1812 6 1 5.1546 1.0880 -1.2943 7 6 3.6417 2.2811 -2.2325 8 7 2.7854 3.2506 -1.9894 9 14 4.1204 1.8774 -3.9924 10 1 3.7539 0.4704 -4.2947 11 1 3.4022 2.7861 -4.9216 12 1 5.5853 2.0542 -4.1599 13 6 4.2381 1.3186 1.2617 14 1 3.5454 1.1903 2.0935 15 6 5.2339 0.1392 1.1958 16 6 6.6151 0.8027 1.3924 17 8 6.4290 2.1727 0.9749 18 6 5.1352 2.5552 1.4904 19 1 5.2029 2.7835 2.5540 20 6 4.5880 3.7597 0.7219 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8901 28 1 2.4027 3.7552 -2.7240 29 1 5.0353 -0.5736 1.9960 30 1 5.1812 -0.3514 0.2238 31 1 7.3631 0.3140 0.7680 32 1 6.9116 0.7623 2.4405 33 1 3.5792 3.9839 1.0683 34 1 5.2313 4.6228 0.8933 35 1 4.5638 3.5306 -0.3435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308443398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = -28.316437 kcal Electronic energy + Delta-G solvation = -15646.832841 eV Core-core repulsion = 13259.573361 eV Total energy + Delta-G solvation = -2387.259481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.84737 -35.59350 -32.51694 -31.57414 -30.37751 -28.96190 -25.56369 -25.01529 -22.53911 -21.14920 -20.27428 -19.24527 -16.54789 -15.49802 -15.11140 -14.55738 -14.36052 -13.95880 -13.50657 -13.18164 -12.67477 -12.30419 -11.59227 -11.51245 -11.15638 -11.12351 -10.83566 -10.74785 -10.56008 -10.43013 -10.27666 -10.15179 -9.94790 -9.77601 -9.67323 -9.39831 -8.83258 -8.23382 -6.59551 -5.75105 -3.20413 3.43190 3.48413 3.51512 4.53692 4.79148 5.26480 5.35590 5.61558 5.73903 5.78749 5.84637 5.93790 6.02234 6.09865 6.27204 6.33179 6.37420 6.51243 6.54483 6.59565 6.72793 6.87863 6.90095 6.93830 7.01742 7.10347 7.29146 7.75538 7.78396 7.91877 8.15814 8.52880 9.25612 9.87674 10.42011 11.25178 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.015847 C = 0.011474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.289360 B = 1766.452733 C = 2439.608140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.144 3.856 4 N -0.572 5.572 5 C -0.238 4.238 6 H 0.067 0.933 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.146 3.854 14 H 0.060 0.940 15 C -0.167 4.167 16 C 0.049 3.951 17 O -0.368 6.368 18 C 0.062 3.938 19 H 0.037 0.963 20 C -0.136 4.136 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.017 0.983 28 H 0.254 0.746 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -4.281 5.789 7.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.290 5.290 5 C -0.368 4.368 6 H 0.084 0.916 7 C -0.193 4.193 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.037 3.963 14 H 0.078 0.922 15 C -0.207 4.207 16 C -0.029 4.029 17 O -0.287 6.287 18 C 0.002 3.998 19 H 0.054 0.946 20 C -0.193 4.193 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.182 -4.000 5.536 6.832 hybrid contribution 0.113 -0.396 -0.653 0.772 sum 0.296 -4.397 4.883 6.577 Atomic orbital electron populations 1.21694 0.97605 0.99863 1.01091 1.22125 0.93642 1.01780 1.00485 1.21070 0.83114 0.92144 1.01915 1.43954 1.00745 1.83526 1.00804 1.18911 1.03481 1.25611 0.88790 0.91556 1.24894 1.00338 0.95474 0.98641 1.70033 1.33534 1.18662 1.30672 0.86537 0.78150 0.77821 0.85454 1.21268 1.21840 1.20853 1.21744 0.92805 0.91747 0.90030 0.92217 1.23372 0.95641 0.99295 1.02383 1.23166 0.97576 0.84361 0.97755 1.89119 1.36503 1.26197 1.76844 1.23493 0.83475 0.98049 0.94767 0.94553 1.21781 0.97433 0.93001 1.07103 0.93062 0.93689 0.94257 0.94308 0.92561 0.87983 0.96418 0.93634 0.92552 0.89741 0.90590 0.94148 0.93010 0.96079 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.14 -2.74 6.26 -26.73 -0.17 -2.90 16 3 C 0.14 3.23 5.21 -4.04 -0.02 3.21 16 4 N -0.57 -13.38 1.65 -163.88 -0.27 -13.65 16 5 C -0.24 -6.18 6.39 -15.06 -0.10 -6.27 16 6 H 0.07 1.79 7.05 -52.49 -0.37 1.42 16 7 C 0.01 0.15 4.32 -17.43 -0.08 0.07 16 8 N -0.89 -24.06 10.67 55.49 0.59 -23.47 16 9 Si 0.89 21.42 29.63 -169.99 -5.04 16.39 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.15 3.02 3.51 -66.36 -0.23 2.79 16 14 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 15 C -0.17 -3.09 6.39 -25.16 -0.16 -3.25 16 16 C 0.05 0.87 7.63 37.94 0.29 1.16 16 17 O -0.37 -8.07 11.22 -35.23 -0.40 -8.47 16 18 C 0.06 1.30 3.62 -25.96 -0.09 1.21 16 19 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.14 -3.15 8.90 37.15 0.33 -2.82 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.10 2.60 5.29 -51.93 -0.27 2.33 16 27 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.72 6.87 -51.93 -0.36 1.36 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.13 3.39 4.19 -51.93 -0.22 3.18 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -26.92 273.90 -6.68 -33.60 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.84 Total: 0.30 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.14 Total: -8.83 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.32 Total: -37.12 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.40 Total: -8.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.92 -6.68 -33.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.283 kcal (2) G-P(sol) polarization free energy of solvation -26.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds