Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47007 * 2 1 4 4 N 1.46501 * 109.47115 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99701 * 95.60207 * 4 3 2 6 6 H 1.07998 * 120.00163 * 210.83279 * 5 4 3 7 7 C 1.38819 * 120.00050 * 30.83984 * 5 4 3 8 8 N 1.31614 * 120.00205 * 26.36731 * 7 5 4 9 9 Si 1.86794 * 119.99826 * 206.37373 * 7 5 4 10 10 H 1.48497 * 109.47390 * 59.99557 * 9 7 5 11 11 H 1.48498 * 109.47200 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47110 * 299.99596 * 9 7 5 13 13 C 1.46500 * 120.00041 * 275.59996 * 4 3 2 14 14 H 1.09000 * 110.45584 * 2.60667 * 13 4 3 15 15 C 1.54507 * 110.50770 * 125.35780 * 13 4 3 16 16 C 1.54486 * 104.06057 * 118.64460 * 15 13 4 17 17 O 1.44420 * 104.80110 * 336.02034 * 16 15 13 18 18 C 1.44429 * 105.27764 * 40.51400 * 17 16 15 19 19 H 1.09001 * 110.37209 * 78.31603 * 18 17 16 20 20 C 1.52994 * 110.46633 * 200.60702 * 18 17 16 21 21 H 1.08995 * 109.47322 * 59.99518 * 1 2 3 22 22 H 1.09005 * 109.47073 * 299.99648 * 1 2 3 23 23 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47707 * 119.99810 * 2 1 3 25 25 H 1.08995 * 109.47139 * 240.00540 * 2 1 3 26 26 H 1.08995 * 109.47109 * 300.00792 * 3 2 1 27 27 H 1.09005 * 109.46917 * 60.00256 * 3 2 1 28 28 H 0.97000 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.08995 * 110.51403 * 237.28800 * 15 13 4 30 30 H 1.09003 * 110.51386 * 0.02562 * 15 13 4 31 31 H 1.09002 * 110.36961 * 217.18918 * 16 15 13 32 32 H 1.09003 * 110.46426 * 94.90132 * 16 15 13 33 33 H 1.08995 * 109.47488 * 175.43053 * 20 18 17 34 34 H 1.09003 * 109.47242 * 295.43656 * 20 18 17 35 35 H 1.09004 * 109.47639 * 55.43053 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1891 1.5586 -1.1812 6 1 5.1546 1.0880 -1.2943 7 6 3.6417 2.2811 -2.2325 8 7 2.7854 3.2506 -1.9894 9 14 4.1204 1.8774 -3.9924 10 1 3.7539 0.4704 -4.2947 11 1 3.4022 2.7861 -4.9216 12 1 5.5853 2.0542 -4.1599 13 6 4.2381 1.3186 1.2617 14 1 3.5454 1.1903 2.0935 15 6 5.2339 0.1392 1.1958 16 6 6.6151 0.8027 1.3924 17 8 6.4290 2.1727 0.9749 18 6 5.1352 2.5552 1.4904 19 1 5.2029 2.7835 2.5540 20 6 4.5880 3.7597 0.7219 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8901 28 1 2.4027 3.7552 -2.7240 29 1 5.0353 -0.5736 1.9960 30 1 5.1812 -0.3514 0.2238 31 1 7.3631 0.3140 0.7680 32 1 6.9116 0.7623 2.4405 33 1 3.5792 3.9839 1.0683 34 1 5.2313 4.6228 0.8933 35 1 4.5638 3.5306 -0.3435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308443398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -43.207736 kcal Electronic energy + Delta-G solvation = -15647.478576 eV Core-core repulsion = 13259.573361 eV Total energy + Delta-G solvation = -2387.905216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47086 -37.33475 -34.17484 -33.38560 -32.00308 -30.67933 -27.39741 -26.64094 -24.25073 -22.72069 -21.87375 -20.99367 -18.38348 -17.16212 -16.91544 -16.15558 -16.11527 -15.53260 -15.20538 -14.94039 -14.27604 -13.85617 -13.33969 -13.11453 -12.88755 -12.86830 -12.68122 -12.54501 -12.20436 -12.06456 -11.97305 -11.87317 -11.60977 -11.49274 -11.35719 -11.14627 -10.43208 -10.20370 -8.49875 -7.73002 -5.19843 1.48218 1.51082 1.55633 2.58265 3.25658 3.31191 3.61863 4.08942 4.22703 4.35997 4.39960 4.43046 4.52838 4.61739 4.75947 4.80006 4.88575 4.92688 4.96854 5.11241 5.15450 5.25458 5.28705 5.32018 5.41850 5.44505 5.63026 5.83305 5.96860 6.08813 6.32484 6.55554 7.29084 7.99093 8.47363 9.22978 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.015847 C = 0.011474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.289360 B = 1766.452733 C = 2439.608140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.144 3.856 4 N -0.581 5.581 5 C -0.226 4.226 6 H 0.052 0.948 7 C -0.036 4.036 8 N -0.905 5.905 9 Si 0.935 3.065 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.286 1.286 13 C 0.137 3.863 14 H 0.078 0.922 15 C -0.158 4.158 16 C 0.046 3.954 17 O -0.398 6.398 18 C 0.062 3.938 19 H 0.064 0.936 20 C -0.130 4.130 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.247 0.753 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.026 0.974 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -5.562 7.355 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.300 5.300 5 C -0.357 4.357 6 H 0.070 0.930 7 C -0.232 4.232 8 N -0.550 5.550 9 Si 0.765 3.235 10 H -0.212 1.212 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.028 3.972 14 H 0.096 0.904 15 C -0.198 4.198 16 C -0.030 4.030 17 O -0.318 6.318 18 C 0.002 3.998 19 H 0.082 0.918 20 C -0.187 4.187 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.344 -5.303 7.115 8.881 hybrid contribution 0.103 -0.007 -1.073 1.078 sum 0.447 -5.310 6.043 8.057 Atomic orbital electron populations 1.21634 0.95220 1.01475 1.01290 1.21943 0.95686 0.99251 0.99986 1.20996 0.82858 0.93821 1.00488 1.44069 1.01158 1.83589 1.01220 1.18837 1.02762 1.24163 0.89936 0.93036 1.25326 1.01219 0.95921 1.00779 1.70135 1.34751 1.19516 1.30605 0.85833 0.77396 0.77313 0.82921 1.21231 1.22257 1.21236 1.21983 0.93396 0.92552 0.89229 0.90410 1.23277 0.95322 0.98816 1.02360 1.23397 0.97446 0.82332 0.99846 1.89083 1.36566 1.28433 1.77677 1.23487 0.83448 0.97153 0.95682 0.91818 1.21617 0.97418 0.94545 1.05120 0.94025 0.92376 0.91912 0.93022 0.94681 0.91086 0.96140 0.94365 0.89200 0.92124 0.89689 0.90891 0.93750 0.95477 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.13 -4.84 6.26 30.60 0.19 -4.65 16 3 C 0.14 6.43 5.21 86.38 0.45 6.88 16 4 N -0.58 -26.93 1.65 -672.39 -1.11 -28.03 16 5 C -0.23 -11.82 6.39 84.04 0.54 -11.28 16 6 H 0.05 2.82 7.05 -2.91 -0.02 2.80 16 7 C -0.04 -1.93 4.32 84.86 0.37 -1.56 16 8 N -0.90 -50.38 10.67 21.65 0.23 -50.15 16 9 Si 0.93 44.80 29.63 68.60 2.03 46.83 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 C 0.14 5.37 3.51 46.01 0.16 5.53 16 14 H 0.08 2.76 7.95 -2.39 -0.02 2.74 16 15 C -0.16 -5.41 6.39 31.61 0.20 -5.21 16 16 C 0.05 1.52 7.63 72.49 0.55 2.07 16 17 O -0.40 -16.78 11.22 -148.98 -1.67 -18.45 16 18 C 0.06 2.49 3.62 31.09 0.11 2.60 16 19 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.13 -5.97 8.90 71.98 0.64 -5.33 16 21 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 3.68 5.29 -2.39 -0.01 3.67 16 27 H 0.02 0.88 8.08 -2.38 -0.02 0.86 16 28 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.37 6.87 -2.39 -0.02 2.35 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 4.97 4.19 -2.39 -0.01 4.96 16 Total: -1.00 -57.83 273.90 4.45 -53.38 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.04 Total: 10.93 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.93 Total: -14.51 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -0.88 Total: -78.18 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -1.67 Total: -18.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -57.83 4.45 -53.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.170 kcal (2) G-P(sol) polarization free energy of solvation -57.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds