Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47537 * 2 1 4 4 N 1.46495 * 109.47629 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99971 * 264.51077 * 4 3 2 6 6 H 1.08001 * 120.00039 * 146.57169 * 5 4 3 7 7 C 1.38813 * 119.99877 * 326.57326 * 5 4 3 8 8 N 1.31621 * 120.00114 * 337.27234 * 7 5 4 9 9 Si 1.86802 * 119.99980 * 157.27450 * 7 5 4 10 10 H 1.48500 * 109.47025 * 90.00104 * 9 7 5 11 11 H 1.48495 * 109.47294 * 209.99801 * 9 7 5 12 12 H 1.48501 * 109.47154 * 330.00257 * 9 7 5 13 13 C 1.46498 * 120.00209 * 84.50542 * 4 3 2 14 14 H 1.08997 * 110.75106 * 359.30407 * 13 4 3 15 15 C 1.55305 * 110.85231 * 235.82942 * 13 4 3 16 16 C 1.54946 * 100.94531 * 207.47556 * 15 13 4 17 17 O 1.43648 * 105.13589 * 36.44364 * 16 15 13 18 18 C 1.43240 * 109.96860 * 335.57132 * 17 16 15 19 19 H 1.09007 * 109.82660 * 121.22682 * 18 17 16 20 20 C 1.52996 * 109.83263 * 242.19584 * 18 17 16 21 21 H 1.09004 * 109.47233 * 299.99696 * 1 2 3 22 22 H 1.08993 * 109.47407 * 60.00213 * 1 2 3 23 23 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47134 * 239.99538 * 2 1 3 25 25 H 1.09005 * 109.47405 * 120.00481 * 2 1 3 26 26 H 1.09001 * 109.47286 * 59.99631 * 3 2 1 27 27 H 1.09004 * 109.47013 * 300.00096 * 3 2 1 28 28 H 0.96999 * 119.99890 * 180.02562 * 8 7 5 29 29 H 1.08998 * 111.12440 * 325.39513 * 15 13 4 30 30 H 1.08997 * 111.12245 * 89.55100 * 15 13 4 31 31 H 1.08992 * 110.31021 * 155.35701 * 16 15 13 32 32 H 1.09005 * 110.30579 * 277.53168 * 16 15 13 33 33 H 1.08996 * 109.47418 * 178.13492 * 20 18 17 34 34 H 1.09005 * 109.47250 * 298.13762 * 20 18 17 35 35 H 1.09000 * 109.47162 * 58.13641 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5557 1.1796 6 1 5.1362 1.0502 1.3054 7 6 3.6687 2.3202 2.2142 8 7 2.7960 3.2708 1.9550 9 14 4.2055 1.9999 3.9746 10 1 5.3934 2.8337 4.2893 11 1 3.0979 2.3469 4.9008 12 1 4.5521 0.5647 4.1330 13 6 4.2370 1.3211 -1.2638 14 1 3.5471 1.2281 -2.1025 15 6 5.2194 0.1191 -1.2202 16 6 6.3049 0.5899 -2.2206 17 8 6.4122 2.0079 -2.0177 18 6 5.1916 2.5171 -1.4677 19 1 5.3901 2.9992 -0.5104 20 6 4.5652 3.5220 -2.4366 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4319 3.8053 2.6779 29 1 5.6358 -0.0119 -0.2215 30 1 4.7368 -0.7952 -1.5656 31 1 7.2559 0.1036 -2.0035 32 1 5.9947 0.3765 -3.2436 33 1 3.6206 3.8807 -2.0277 34 1 5.2437 4.3636 -2.5763 35 1 4.3849 3.0375 -3.3963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308443399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -40.053960 kcal Electronic energy + Delta-G solvation = -15348.648890 eV Core-core repulsion = 12960.880432 eV Total energy + Delta-G solvation = -2387.768458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.87638 -35.72097 -32.52670 -31.71099 -30.68116 -29.20002 -25.67510 -25.12102 -22.70493 -20.81997 -20.36237 -19.67779 -16.59744 -16.07068 -15.21197 -14.50772 -14.04428 -13.71970 -13.62054 -12.99506 -12.97115 -12.58127 -12.15701 -11.74193 -11.38091 -11.27986 -11.09987 -10.83683 -10.75662 -10.58902 -10.53260 -10.36732 -10.02147 -9.96641 -9.60918 -9.44139 -8.77892 -8.44492 -6.62242 -5.82507 -3.34886 3.34993 3.42902 3.46015 4.41473 4.62569 5.23212 5.26643 5.52619 5.66817 5.75627 5.82735 5.87894 5.98441 6.00514 6.14540 6.21736 6.24774 6.36796 6.44423 6.51617 6.57651 6.63684 6.82710 6.85531 6.86994 6.90615 7.17513 7.27746 7.73586 7.78145 7.84495 8.47400 9.16442 9.79505 10.34941 11.18234 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.013321 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.840354 B = 2101.431920 C = 2714.177303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.145 3.855 4 N -0.571 5.571 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.152 3.848 14 H 0.062 0.938 15 C -0.171 4.171 16 C 0.053 3.947 17 O -0.392 6.392 18 C 0.057 3.943 19 H 0.098 0.902 20 C -0.149 4.149 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.019 0.981 28 H 0.255 0.745 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -4.370 -5.794 7.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.019 3.981 4 N -0.290 5.290 5 C -0.386 4.386 6 H 0.082 0.918 7 C -0.189 4.189 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.043 3.957 14 H 0.080 0.920 15 C -0.211 4.211 16 C -0.024 4.024 17 O -0.311 6.311 18 C -0.002 4.002 19 H 0.116 0.884 20 C -0.206 4.206 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.104 -4.098 -5.717 7.035 hybrid contribution 0.042 -0.285 0.930 0.974 sum -0.062 -4.383 -4.787 6.491 Atomic orbital electron populations 1.21693 0.97520 0.99927 1.01134 1.22125 0.93719 1.01679 1.00541 1.21063 0.82947 0.92171 1.01941 1.43834 1.00920 1.83643 1.00554 1.18966 1.05612 1.24088 0.89951 0.91840 1.25063 0.99659 0.95000 0.99138 1.70000 1.32956 1.18700 1.31194 0.86419 0.77819 0.78283 0.85024 1.21250 1.21512 1.20374 1.21882 0.92484 0.91177 0.90156 0.91962 1.23629 0.97625 0.99604 1.00245 1.23168 0.98889 0.82746 0.97579 1.88330 1.37100 1.20997 1.84686 1.23382 0.84093 0.96048 0.96670 0.88432 1.22007 1.00860 0.99045 0.98738 0.93052 0.93631 0.94183 0.94249 0.92525 0.88066 0.96264 0.93517 0.89777 0.91642 0.91146 0.93647 0.91452 0.93305 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.15 0.37 -2.02 16 2 C -0.14 -2.75 6.25 -26.74 -0.17 -2.92 16 3 C 0.14 3.30 5.20 -4.05 -0.02 3.27 16 4 N -0.57 -13.59 2.53 -163.46 -0.41 -14.01 16 5 C -0.26 -6.73 7.90 -15.06 -0.12 -6.84 16 6 H 0.06 1.69 6.55 -52.49 -0.34 1.34 16 7 C 0.01 0.31 4.91 -17.43 -0.09 0.22 16 8 N -0.89 -24.65 11.34 55.49 0.63 -24.02 16 9 Si 0.90 21.24 29.61 -169.99 -5.03 16.20 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.15 3.18 3.06 -65.99 -0.20 2.98 16 14 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 15 C -0.17 -3.20 6.69 -24.48 -0.16 -3.36 16 16 C 0.05 0.91 7.78 38.18 0.30 1.21 16 17 O -0.39 -8.01 11.02 -35.23 -0.39 -8.40 16 18 C 0.06 1.21 3.79 -26.01 -0.10 1.11 16 19 H 0.10 2.43 7.06 -51.93 -0.37 2.06 16 20 C -0.15 -2.80 9.44 37.16 0.35 -2.45 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.10 2.61 5.33 -51.93 -0.28 2.34 16 27 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.08 1.73 6.41 -51.93 -0.33 1.39 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -27.38 279.69 -6.75 -34.13 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.92 Total: 0.68 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 0.16 Total: -8.80 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.22 Total: -38.02 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.39 Total: -8.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.38 -6.75 -34.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.925 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds