Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47537 * 2 1 4 4 N 1.46495 * 109.47629 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99971 * 264.51077 * 4 3 2 6 6 H 1.08001 * 120.00039 * 146.57169 * 5 4 3 7 7 C 1.38813 * 119.99877 * 326.57326 * 5 4 3 8 8 N 1.31621 * 120.00114 * 337.27234 * 7 5 4 9 9 Si 1.86802 * 119.99980 * 157.27450 * 7 5 4 10 10 H 1.48500 * 109.47025 * 90.00104 * 9 7 5 11 11 H 1.48495 * 109.47294 * 209.99801 * 9 7 5 12 12 H 1.48501 * 109.47154 * 330.00257 * 9 7 5 13 13 C 1.46498 * 120.00209 * 84.50542 * 4 3 2 14 14 H 1.08997 * 110.75106 * 359.30407 * 13 4 3 15 15 C 1.55305 * 110.85231 * 235.82942 * 13 4 3 16 16 C 1.54946 * 100.94531 * 207.47556 * 15 13 4 17 17 O 1.43648 * 105.13589 * 36.44364 * 16 15 13 18 18 C 1.43240 * 109.96860 * 335.57132 * 17 16 15 19 19 H 1.09007 * 109.82660 * 121.22682 * 18 17 16 20 20 C 1.52996 * 109.83263 * 242.19584 * 18 17 16 21 21 H 1.09004 * 109.47233 * 299.99696 * 1 2 3 22 22 H 1.08993 * 109.47407 * 60.00213 * 1 2 3 23 23 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47134 * 239.99538 * 2 1 3 25 25 H 1.09005 * 109.47405 * 120.00481 * 2 1 3 26 26 H 1.09001 * 109.47286 * 59.99631 * 3 2 1 27 27 H 1.09004 * 109.47013 * 300.00096 * 3 2 1 28 28 H 0.96999 * 119.99890 * 180.02562 * 8 7 5 29 29 H 1.08998 * 111.12440 * 325.39513 * 15 13 4 30 30 H 1.08997 * 111.12245 * 89.55100 * 15 13 4 31 31 H 1.08992 * 110.31021 * 155.35701 * 16 15 13 32 32 H 1.09005 * 110.30579 * 277.53168 * 16 15 13 33 33 H 1.08996 * 109.47418 * 178.13492 * 20 18 17 34 34 H 1.09005 * 109.47250 * 298.13762 * 20 18 17 35 35 H 1.09000 * 109.47162 * 58.13641 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5557 1.1796 6 1 5.1362 1.0502 1.3054 7 6 3.6687 2.3202 2.2142 8 7 2.7960 3.2708 1.9550 9 14 4.2055 1.9999 3.9746 10 1 5.3934 2.8337 4.2893 11 1 3.0979 2.3469 4.9008 12 1 4.5521 0.5647 4.1330 13 6 4.2370 1.3211 -1.2638 14 1 3.5471 1.2281 -2.1025 15 6 5.2194 0.1191 -1.2202 16 6 6.3049 0.5899 -2.2206 17 8 6.4122 2.0079 -2.0177 18 6 5.1916 2.5171 -1.4677 19 1 5.3901 2.9992 -0.5104 20 6 4.5652 3.5220 -2.4366 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4319 3.8053 2.6779 29 1 5.6358 -0.0119 -0.2215 30 1 4.7368 -0.7952 -1.5656 31 1 7.2559 0.1036 -2.0035 32 1 5.9947 0.3765 -3.2436 33 1 3.6206 3.8807 -2.0277 34 1 5.2437 4.3636 -2.5763 35 1 4.3849 3.0375 -3.3963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308443399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -55.703896 kcal Electronic energy + Delta-G solvation = -15349.327522 eV Core-core repulsion = 12960.880432 eV Total energy + Delta-G solvation = -2388.447090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48197 -37.48492 -34.18439 -33.54508 -32.20754 -30.89743 -27.43960 -26.77021 -24.36536 -22.37037 -21.98691 -21.44129 -18.46039 -17.72765 -16.93883 -16.31771 -15.67399 -15.40695 -15.19124 -14.70476 -14.54974 -14.12903 -13.69178 -13.29845 -13.22350 -12.83288 -12.80449 -12.67795 -12.36726 -12.23432 -12.08889 -12.01250 -11.77528 -11.61190 -11.31571 -11.20682 -10.47805 -10.29965 -8.55902 -7.82718 -5.38044 1.43926 1.47306 1.55534 2.49769 3.04103 3.23411 3.59194 3.98245 4.12288 4.28886 4.36749 4.42126 4.45289 4.55756 4.60223 4.73426 4.76527 4.85385 4.89989 4.97531 5.11868 5.15215 5.27470 5.29732 5.32148 5.38451 5.46611 5.60625 5.72370 5.91003 6.25693 6.47928 7.18312 7.88390 8.37775 9.14189 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.013321 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.840354 B = 2101.431920 C = 2714.177303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.144 3.856 4 N -0.583 5.583 5 C -0.254 4.254 6 H 0.055 0.945 7 C -0.036 4.036 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.274 1.274 13 C 0.146 3.854 14 H 0.078 0.922 15 C -0.164 4.164 16 C 0.053 3.947 17 O -0.406 6.406 18 C 0.061 3.939 19 H 0.050 0.950 20 C -0.140 4.140 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.021 0.979 28 H 0.251 0.749 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -5.785 -7.175 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.019 3.981 4 N -0.303 5.303 5 C -0.384 4.384 6 H 0.073 0.927 7 C -0.233 4.233 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.199 1.199 13 C 0.037 3.963 14 H 0.096 0.904 15 C -0.204 4.204 16 C -0.023 4.023 17 O -0.326 6.326 18 C 0.002 3.998 19 H 0.068 0.932 20 C -0.198 4.198 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.090 -5.535 -7.114 9.014 hybrid contribution 0.092 0.131 1.287 1.297 sum 0.002 -5.403 -5.827 7.947 Atomic orbital electron populations 1.21636 0.95035 1.01625 1.01340 1.21942 0.95844 0.98957 1.00146 1.21007 0.82597 0.94054 1.00471 1.43994 1.01438 1.83840 1.01010 1.19065 1.05209 1.23012 0.91134 0.92724 1.25647 1.00400 0.95210 1.02012 1.70115 1.34386 1.19716 1.31611 0.85574 0.77101 0.78098 0.81479 1.21495 1.21654 1.19861 1.22065 0.92882 0.92010 0.89295 0.90378 1.23537 0.97544 0.99619 0.99650 1.23407 0.99496 0.80841 0.98596 1.88303 1.36722 1.23043 1.84539 1.23146 0.84695 0.96561 0.95435 0.93176 1.21899 0.99981 0.98824 0.99071 0.93977 0.92356 0.91699 0.92941 0.94459 0.91227 0.96026 0.93998 0.92243 0.89289 0.89134 0.90689 0.92877 0.92670 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.91 71.98 0.71 -3.55 16 2 C -0.13 -4.87 6.25 30.59 0.19 -4.68 16 3 C 0.14 6.57 5.20 86.38 0.45 7.02 16 4 N -0.58 -27.86 2.53 -671.08 -1.70 -29.56 16 5 C -0.25 -13.53 7.90 84.03 0.66 -12.87 16 6 H 0.06 2.97 6.55 -2.91 -0.02 2.95 16 7 C -0.04 -1.94 4.91 84.86 0.42 -1.52 16 8 N -0.91 -52.27 11.34 21.65 0.25 -52.02 16 9 Si 0.95 44.48 29.61 68.60 2.03 46.51 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.15 5.91 3.06 46.25 0.14 6.06 16 14 H 0.08 2.91 7.66 -2.39 -0.02 2.89 16 15 C -0.16 -5.79 6.69 32.05 0.21 -5.58 16 16 C 0.05 1.65 7.78 72.65 0.56 2.22 16 17 O -0.41 -15.96 11.02 -148.98 -1.64 -17.60 16 18 C 0.06 2.57 3.79 31.06 0.12 2.69 16 19 H 0.05 2.58 7.06 -2.38 -0.02 2.56 16 20 C -0.14 -5.11 9.44 71.98 0.68 -4.43 16 21 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 3.68 5.33 -2.39 -0.01 3.66 16 27 H 0.02 0.94 8.07 -2.38 -0.02 0.92 16 28 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.06 2.39 6.41 -2.39 -0.02 2.38 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -59.23 279.69 4.13 -55.10 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.03 Total: 12.24 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.15 Total: -14.67 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.45 Total: -81.58 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.64 Total: -17.60 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -59.23 4.13 -55.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308443399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.600 kcal (2) G-P(sol) polarization free energy of solvation -59.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds