Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 O 1.42898 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46932 * 120.00227 * 2 1 3 6 6 C 1.46903 * 110.99415 * 299.99667 * 5 2 1 7 7 C 1.53002 * 109.46473 * 180.02562 * 6 5 2 8 8 C 1.50701 * 109.46993 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00026 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00181 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99658 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00154 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46999 * 120.00117 * 12 10 8 15 15 H 1.48501 * 109.47356 * 240.00221 * 12 10 8 16 16 C 1.53003 * 109.46978 * 239.99948 * 2 1 3 17 17 C 1.53001 * 117.51964 * 356.28481 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47562 * 299.99950 * 1 2 3 21 21 H 1.09004 * 109.47159 * 60.00101 * 1 2 3 22 22 H 1.09004 * 109.47051 * 299.99965 * 3 2 1 23 23 H 1.08991 * 109.47188 * 59.99959 * 3 2 1 24 24 H 0.96696 * 114.00287 * 179.97438 * 4 3 2 25 25 H 1.00890 * 111.00067 * 63.95438 * 5 2 1 26 26 H 1.08992 * 109.47507 * 299.99703 * 6 5 2 27 27 H 1.09000 * 109.47527 * 60.00712 * 6 5 2 28 28 H 1.09006 * 109.47148 * 299.99878 * 7 6 5 29 29 H 1.08997 * 109.47550 * 60.00100 * 7 6 5 30 30 H 0.97002 * 119.99417 * 179.97438 * 11 10 8 31 31 H 1.09002 * 115.54973 * 210.58264 * 16 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 35 35 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 7 2.0196 -0.6926 1.1994 6 6 1.5486 -0.0263 2.4210 7 6 2.0781 -0.7742 3.6462 8 6 1.5944 -0.0912 4.8995 9 1 0.9713 0.7881 4.8291 10 6 1.9465 -0.5895 6.1359 11 7 2.7041 -1.6611 6.2216 12 14 1.3476 0.2576 7.6894 13 1 0.5163 1.4324 7.3235 14 1 0.5348 -0.6933 8.4897 15 1 2.5149 0.7066 8.4899 16 6 2.0400 -0.7213 -1.2493 17 6 0.9990 -1.3564 -2.1734 18 6 1.7329 -0.0858 -2.6068 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6766 1.9563 -0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.8623 2.3258 -0.0010 25 1 1.7502 -1.6648 1.1909 26 1 1.9121 1.0011 2.4379 27 1 0.4587 -0.0265 2.4379 28 1 1.7149 -1.8019 3.6297 29 1 3.1680 -0.7737 3.6293 30 1 2.9521 -2.0114 7.0915 31 1 2.9949 -1.2351 -1.1386 32 1 1.2690 -2.2880 -2.6706 33 1 -0.0495 -1.2607 -1.8912 34 1 1.1673 0.8460 -2.6098 35 1 2.4860 -0.1812 -3.3890 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = -29.506502 kcal Electronic energy + Delta-G solvation = -14659.361355 eV Core-core repulsion = 12272.050270 eV Total energy + Delta-G solvation = -2387.311086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30925 -35.94870 -35.10505 -32.92186 -30.52812 -27.92997 -26.25447 -24.64129 -22.63797 -22.12957 -20.23187 -18.43540 -17.00929 -16.57946 -16.11254 -14.78807 -14.63543 -14.38134 -14.31804 -13.30927 -13.04293 -12.67309 -12.20943 -12.12231 -11.94022 -11.52830 -11.27491 -11.03973 -10.92908 -10.55094 -10.47129 -10.20839 -9.97392 -9.77630 -9.57642 -9.26784 -9.06354 -8.31620 -7.64362 -5.96090 -3.98410 3.32816 3.39970 3.43756 3.89789 4.36233 4.49511 4.72168 4.82694 4.99501 5.14127 5.37000 5.39770 5.50388 5.55216 5.61342 5.66043 5.72755 5.85286 5.96997 6.10448 6.14943 6.23296 6.38455 6.48016 6.57333 7.06977 7.60359 7.79979 7.89370 7.97235 8.07441 8.16857 8.48703 9.09360 9.64995 11.15457 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051711 B = 0.006246 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.345684 B = 4481.811474 C = 4579.951145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.143 3.857 3 C 0.094 3.906 4 O -0.548 6.548 5 N -0.667 5.667 6 C 0.064 3.936 7 C 0.026 3.974 8 C -0.519 4.519 9 H 0.053 0.947 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.121 4.121 17 C -0.194 4.194 18 C -0.178 4.178 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.367 0.633 25 H 0.336 0.664 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.026 0.974 30 H 0.259 0.741 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 4.431 -15.331 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.051 3.949 3 C 0.015 3.985 4 O -0.351 6.351 5 N -0.298 5.298 6 C -0.064 4.064 7 C -0.012 4.012 8 C -0.558 4.558 9 H 0.071 0.929 10 C -0.144 4.144 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.139 4.139 17 C -0.230 4.230 18 C -0.215 4.215 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.212 0.788 25 H 0.154 0.846 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.859 3.984 -15.190 15.961 hybrid contribution -1.224 0.763 0.926 1.714 sum -4.082 4.747 -14.263 15.577 Atomic orbital electron populations 1.22624 0.97070 1.02535 1.02094 1.20368 0.90949 0.92886 0.90656 1.22176 0.82012 0.95651 0.98637 1.86645 1.18800 1.32108 1.97524 1.60635 1.62979 1.05579 1.00566 1.22222 0.95875 0.98777 0.89539 1.19057 0.97305 0.94984 0.89833 1.21214 1.31301 1.12241 0.91053 0.92856 1.25004 0.95223 0.95061 0.99109 1.69992 1.36602 1.22417 1.24219 0.86550 0.78553 0.79522 0.83435 1.19832 1.21061 1.20980 1.22191 0.99862 1.02356 0.89536 1.23191 0.98371 0.96832 1.04656 1.22859 1.03457 0.96779 0.98406 0.91694 0.91676 0.92586 0.94482 0.93579 0.78847 0.84632 0.92326 0.96574 0.96929 0.95601 0.93086 0.86965 0.89241 0.88466 0.89356 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 6.80 37.16 0.25 -2.23 16 2 C 0.14 2.17 0.60 -131.60 -0.08 2.09 16 3 C 0.09 1.36 5.35 37.16 0.20 1.56 16 4 O -0.55 -8.49 13.15 -35.23 -0.46 -8.95 16 5 N -0.67 -12.56 5.96 -99.96 -0.60 -13.16 16 6 C 0.06 1.38 4.84 -3.82 -0.02 1.36 16 7 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 8 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -27.42 13.29 55.43 0.74 -26.69 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 16 C -0.12 -1.65 5.10 -90.61 -0.46 -2.12 16 17 C -0.19 -2.19 9.50 -26.73 -0.25 -2.45 16 18 C -0.18 -2.00 9.40 -26.73 -0.25 -2.25 16 19 H 0.06 0.85 7.23 -51.93 -0.38 0.48 16 20 H 0.06 0.95 6.40 -51.93 -0.33 0.61 16 21 H 0.06 0.64 7.18 -51.93 -0.37 0.27 16 22 H 0.04 0.45 7.00 -51.93 -0.36 0.09 16 23 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 24 H 0.37 3.96 9.12 45.56 0.42 4.37 16 25 H 0.34 6.19 8.72 -39.30 -0.34 5.85 16 26 H 0.06 1.29 6.30 -51.93 -0.33 0.96 16 27 H 0.02 0.34 6.30 -51.93 -0.33 0.01 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.05 5.82 -51.93 -0.30 0.75 16 34 H 0.09 0.93 7.08 -51.93 -0.37 0.57 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -31.93 278.98 -6.99 -38.93 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.68 Total: 5.98 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.17 Total: -17.23 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.14 Total: -39.84 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.46 Total: -8.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.93 -6.99 -38.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.421 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds