Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 O 1.42898 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46932 * 120.00227 * 2 1 3 6 6 C 1.46903 * 110.99415 * 299.99667 * 5 2 1 7 7 C 1.53002 * 109.46473 * 180.02562 * 6 5 2 8 8 C 1.50701 * 109.46993 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00026 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00181 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99658 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00154 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46999 * 120.00117 * 12 10 8 15 15 H 1.48501 * 109.47356 * 240.00221 * 12 10 8 16 16 C 1.53003 * 109.46978 * 239.99948 * 2 1 3 17 17 C 1.53001 * 117.51964 * 356.28481 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47562 * 299.99950 * 1 2 3 21 21 H 1.09004 * 109.47159 * 60.00101 * 1 2 3 22 22 H 1.09004 * 109.47051 * 299.99965 * 3 2 1 23 23 H 1.08991 * 109.47188 * 59.99959 * 3 2 1 24 24 H 0.96696 * 114.00287 * 179.97438 * 4 3 2 25 25 H 1.00890 * 111.00067 * 63.95438 * 5 2 1 26 26 H 1.08992 * 109.47507 * 299.99703 * 6 5 2 27 27 H 1.09000 * 109.47527 * 60.00712 * 6 5 2 28 28 H 1.09006 * 109.47148 * 299.99878 * 7 6 5 29 29 H 1.08997 * 109.47550 * 60.00100 * 7 6 5 30 30 H 0.97002 * 119.99417 * 179.97438 * 11 10 8 31 31 H 1.09002 * 115.54973 * 210.58264 * 16 2 1 32 32 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 33 33 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 34 34 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 35 35 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 7 2.0196 -0.6926 1.1994 6 6 1.5486 -0.0263 2.4210 7 6 2.0781 -0.7742 3.6462 8 6 1.5944 -0.0912 4.8995 9 1 0.9713 0.7881 4.8291 10 6 1.9465 -0.5895 6.1359 11 7 2.7041 -1.6611 6.2216 12 14 1.3476 0.2576 7.6894 13 1 0.5163 1.4324 7.3235 14 1 0.5348 -0.6933 8.4897 15 1 2.5149 0.7066 8.4899 16 6 2.0400 -0.7213 -1.2493 17 6 0.9990 -1.3564 -2.1734 18 6 1.7329 -0.0858 -2.6068 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6766 1.9563 -0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.8623 2.3258 -0.0010 25 1 1.7502 -1.6648 1.1909 26 1 1.9121 1.0011 2.4379 27 1 0.4587 -0.0265 2.4379 28 1 1.7149 -1.8019 3.6297 29 1 3.1680 -0.7737 3.6293 30 1 2.9521 -2.0114 7.0915 31 1 2.9949 -1.2351 -1.1386 32 1 1.2690 -2.2880 -2.6706 33 1 -0.0495 -1.2607 -1.8912 34 1 1.1673 0.8460 -2.6098 35 1 2.4860 -0.1812 -3.3890 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379385734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = -53.697756 kcal Electronic energy + Delta-G solvation = -14660.410367 eV Core-core repulsion = 12272.050270 eV Total energy + Delta-G solvation = -2388.360097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46222 -37.06333 -36.62537 -34.92940 -32.21529 -29.59053 -27.37935 -26.42682 -24.17528 -23.00807 -21.99310 -19.64310 -18.49910 -18.14598 -17.58023 -16.46196 -16.13879 -15.87457 -15.51781 -14.60811 -14.45997 -14.35983 -13.88249 -13.46630 -13.22028 -12.91996 -12.79519 -12.72824 -12.39179 -12.21230 -11.86504 -11.58510 -11.48654 -11.33834 -10.98442 -10.77115 -10.70110 -10.56242 -9.14082 -8.20345 -6.32285 1.39664 1.40672 1.53878 2.40178 2.93283 3.12926 3.22722 3.53495 3.78779 4.01868 4.15122 4.34011 4.36867 4.48657 4.49530 4.54845 4.64136 4.68263 4.80155 4.84037 5.00203 5.05090 5.11563 5.27943 5.31319 5.37511 5.47192 5.69144 5.81203 6.17603 6.37663 6.58921 6.85630 7.04972 7.37134 8.92359 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051711 B = 0.006246 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.345684 B = 4481.811474 C = 4579.951145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.138 3.862 3 C 0.091 3.909 4 O -0.573 6.573 5 N -0.680 5.680 6 C 0.087 3.913 7 C 0.033 3.967 8 C -0.542 4.542 9 H 0.060 0.940 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.969 3.031 13 H -0.260 1.260 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.144 4.144 17 C -0.182 4.182 18 C -0.161 4.161 19 H 0.066 0.934 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.033 0.967 24 H 0.385 0.615 25 H 0.334 0.666 26 H 0.055 0.945 27 H 0.024 0.976 28 H -0.011 1.011 29 H -0.012 1.012 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 5.711 -16.234 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.047 3.953 3 C 0.013 3.987 4 O -0.379 6.379 5 N -0.311 5.311 6 C -0.042 4.042 7 C -0.005 4.005 8 C -0.580 4.580 9 H 0.079 0.921 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.793 3.207 13 H -0.184 1.184 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.163 4.163 17 C -0.219 4.219 18 C -0.198 4.198 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.233 0.767 25 H 0.152 0.848 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.234 5.284 -16.120 17.484 hybrid contribution -0.736 0.336 1.140 1.398 sum -4.970 5.619 -14.979 16.753 Atomic orbital electron populations 1.22550 0.95465 1.02892 1.02759 1.20541 0.92218 0.93119 0.89384 1.22256 0.81644 0.95308 0.99458 1.86597 1.19541 1.34123 1.97592 1.60540 1.63788 1.05686 1.01053 1.21781 0.95846 0.97714 0.88825 1.18911 0.94849 0.94390 0.92345 1.21627 1.31609 1.12672 0.92135 0.92137 1.26016 0.95126 0.95669 1.03076 1.70134 1.37765 1.24035 1.25423 0.85340 0.78225 0.78667 0.78434 1.18431 1.20229 1.20352 1.21979 0.99827 1.04322 0.90177 1.23269 0.98164 0.97446 1.03004 1.22959 1.03229 0.97244 0.96385 0.91519 0.92984 0.89839 0.91369 0.94863 0.76746 0.84799 0.92695 0.95836 0.99298 0.99354 0.92753 0.89418 0.88417 0.87578 0.88014 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.42 6.80 71.98 0.49 -3.93 16 2 C 0.14 4.05 0.60 3.53 0.00 4.05 16 3 C 0.09 2.52 5.35 71.98 0.39 2.91 16 4 O -0.57 -17.32 13.15 -148.98 -1.96 -19.28 16 5 N -0.68 -26.03 5.96 -470.17 -2.80 -28.83 16 6 C 0.09 3.82 4.84 86.30 0.42 4.24 16 7 C 0.03 1.82 5.23 29.85 0.16 1.98 16 8 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 11 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 12 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 C -0.14 -3.76 5.10 -10.79 -0.06 -3.81 16 17 C -0.18 -3.65 9.50 30.59 0.29 -3.36 16 18 C -0.16 -3.13 9.40 30.60 0.29 -2.84 16 19 H 0.07 1.62 7.23 -2.39 -0.02 1.61 16 20 H 0.05 1.43 6.40 -2.39 -0.02 1.41 16 21 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 22 H 0.07 1.45 7.00 -2.39 -0.02 1.43 16 23 H 0.03 0.99 6.40 -2.39 -0.02 0.97 16 24 H 0.38 7.94 9.12 -74.06 -0.68 7.26 16 25 H 0.33 12.70 8.72 -89.70 -0.78 11.92 16 26 H 0.05 2.45 6.30 -2.39 -0.02 2.43 16 27 H 0.02 1.00 6.30 -2.39 -0.02 0.98 16 28 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.96 5.82 -2.39 -0.01 1.94 16 34 H 0.10 1.72 7.08 -2.39 -0.02 1.71 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -69.46 278.98 -0.15 -69.61 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.37 Total: 21.69 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 2.67 Total: -31.96 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.52 Total: -87.07 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.96 Total: -19.28 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.46 -0.15 -69.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.913 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds