Wall clock time and date at job start Mon Mar 30 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1 5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1 7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2 8 8 C 1.50695 * 109.46861 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00407 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99561 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99588 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00191 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47115 * 90.00019 * 12 10 8 14 14 H 1.48502 * 109.47404 * 209.99704 * 12 10 8 15 15 H 1.48491 * 109.47372 * 330.00167 * 12 10 8 16 16 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 17 17 C 1.52997 * 117.49576 * 3.74549 * 16 2 1 18 18 C 1.52998 * 117.49507 * 295.08473 * 16 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 23 23 H 1.09004 * 109.47313 * 64.99993 * 3 2 1 24 24 H 0.96695 * 114.00050 * 180.02562 * 4 3 2 25 25 H 1.00896 * 111.00594 * 296.04777 * 5 2 1 26 26 H 1.08993 * 109.47004 * 300.00108 * 6 5 2 27 27 H 1.09002 * 109.47091 * 59.99861 * 6 5 2 28 28 H 1.09001 * 109.47170 * 299.99770 * 7 6 5 29 29 H 1.08994 * 109.47243 * 59.99707 * 7 6 5 30 30 H 0.96997 * 119.99375 * 180.02562 * 11 10 8 31 31 H 1.09003 * 115.54997 * 149.41536 * 16 2 1 32 32 H 1.08991 * 117.50428 * 359.97438 * 17 16 2 33 33 H 1.09003 * 117.49788 * 145.03190 * 17 16 2 34 34 H 1.09001 * 117.49520 * 214.98230 * 18 16 2 35 35 H 1.09000 * 117.50495 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4643 1.4441 -0.1174 5 7 2.0196 -0.6926 -1.1994 6 6 1.5486 -0.0264 -2.4211 7 6 2.0782 -0.7742 -3.6463 8 6 1.5945 -0.0912 -4.8995 9 1 0.9720 0.7886 -4.8291 10 6 1.9475 -0.5889 -6.1359 11 7 1.5249 0.0070 -7.2297 12 14 3.0259 -2.1092 -6.2577 13 1 2.1696 -3.3221 -6.2900 14 1 3.8369 -2.0427 -7.4999 15 1 3.9282 -2.1716 -5.0801 16 6 2.0400 -0.7214 1.2492 17 6 0.9987 -1.3569 2.1726 18 6 1.7330 -0.0858 2.6067 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6054 1.9815 -0.8418 23 1 1.7517 1.9298 0.9314 24 1 3.8573 2.3276 -0.1237 25 1 1.7502 -1.6649 -1.1910 26 1 0.4588 -0.0265 -2.4378 27 1 1.9121 1.0011 -2.4379 28 1 3.1681 -0.7737 -3.6294 29 1 1.7151 -1.8018 -3.6298 30 1 1.7730 -0.3434 -8.0995 31 1 2.9949 -1.2352 1.1385 32 1 -0.0497 -1.2608 1.8904 33 1 1.2687 -2.2886 2.6698 34 1 2.4858 -0.1819 3.3891 35 1 1.1673 0.8459 2.6099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379385735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:17 Heat of formation + Delta-G solvation = -26.387738 kcal Electronic energy + Delta-G solvation = -14710.573508 eV Core-core repulsion = 12323.397663 eV Total energy + Delta-G solvation = -2387.175846 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38437 -36.01907 -35.18792 -32.87346 -30.82685 -28.28860 -26.32547 -24.74508 -22.47381 -22.18893 -20.15728 -18.51071 -17.07312 -16.71405 -16.47252 -14.85636 -14.70526 -14.45209 -14.05641 -13.43456 -13.13012 -12.78471 -12.44117 -12.25900 -12.06132 -11.62612 -11.40657 -11.25101 -10.93786 -10.57464 -10.39454 -10.02567 -9.91339 -9.76335 -9.61124 -9.57872 -9.16305 -8.49340 -7.76419 -6.00819 -3.98529 3.35661 3.43029 3.50896 3.82026 4.31330 4.50673 4.64263 4.75286 4.92611 5.07452 5.30458 5.34227 5.43080 5.51412 5.54500 5.59558 5.68316 5.79518 5.90402 6.04133 6.08725 6.15003 6.27268 6.36658 6.46715 6.86649 7.24961 7.45975 7.71887 7.82078 7.95235 8.02092 8.57464 9.03159 9.62240 11.12592 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045639 B = 0.006816 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.361102 B = 4106.844988 C = 4199.752339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.144 3.856 3 C 0.093 3.907 4 O -0.547 6.547 5 N -0.669 5.669 6 C 0.072 3.928 7 C -0.009 4.009 8 C -0.519 4.519 9 H 0.069 0.931 10 C 0.066 3.934 11 N -0.906 5.906 12 Si 0.881 3.119 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.262 1.262 16 C -0.124 4.124 17 C -0.193 4.193 18 C -0.178 4.178 19 H 0.066 0.934 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.367 0.633 25 H 0.334 0.666 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 0.385 18.189 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.052 3.948 3 C 0.015 3.985 4 O -0.350 6.350 5 N -0.299 5.299 6 C -0.056 4.056 7 C -0.047 4.047 8 C -0.557 4.557 9 H 0.087 0.913 10 C -0.135 4.135 11 N -0.545 5.545 12 Si 0.708 3.292 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.187 1.187 16 C -0.142 4.142 17 C -0.230 4.230 18 C -0.215 4.215 19 H 0.085 0.915 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.212 0.788 25 H 0.152 0.848 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.017 0.050 17.969 17.969 hybrid contribution -0.439 -0.392 -0.223 0.629 sum -0.455 -0.342 17.747 17.756 Atomic orbital electron populations 1.22632 0.96899 1.02579 1.02301 1.20360 0.91076 0.92907 0.90416 1.22180 0.82281 0.95538 0.98550 1.86651 1.19175 1.32169 1.97030 1.60638 1.63080 1.05485 1.00727 1.22013 0.96252 0.98814 0.88515 1.19530 0.97220 0.95184 0.92759 1.21078 1.31994 1.13550 0.89110 0.91252 1.25005 0.95710 0.97047 0.95689 1.69923 1.46070 1.40822 0.97670 0.86748 0.81260 0.83445 0.77713 1.20451 1.21470 1.18670 1.22219 0.99911 1.02503 0.89602 1.23206 0.98383 0.96833 1.04541 1.22890 1.03496 0.96870 0.98276 0.91527 0.92457 0.91684 0.93645 0.94281 0.78784 0.84822 0.95978 0.91685 0.95592 0.97446 0.92794 0.86990 0.88387 0.89227 0.89103 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 6.80 37.16 0.25 -2.14 16 2 C 0.14 2.09 0.60 -131.60 -0.08 2.01 16 3 C 0.09 1.30 5.26 37.15 0.20 1.50 16 4 O -0.55 -8.26 13.19 -35.23 -0.46 -8.72 16 5 N -0.67 -11.92 5.86 -99.96 -0.59 -12.50 16 6 C 0.07 1.50 4.84 -3.82 -0.02 1.48 16 7 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 8 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 9 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 10 C 0.07 1.98 5.47 -17.81 -0.10 1.88 16 11 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 12 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 16 C -0.12 -1.60 5.22 -90.62 -0.47 -2.07 16 17 C -0.19 -2.06 9.51 -26.69 -0.25 -2.31 16 18 C -0.18 -1.89 9.35 -26.69 -0.25 -2.14 16 19 H 0.07 0.95 6.40 -51.93 -0.33 0.61 16 20 H 0.06 0.63 7.18 -51.93 -0.37 0.26 16 21 H 0.06 0.81 7.23 -51.93 -0.38 0.44 16 22 H 0.05 0.67 6.68 -51.93 -0.35 0.33 16 23 H 0.04 0.46 6.82 -51.93 -0.35 0.10 16 24 H 0.37 3.86 9.12 45.56 0.42 4.28 16 25 H 0.33 5.70 8.72 -39.29 -0.34 5.36 16 26 H 0.02 0.45 6.30 -51.93 -0.33 0.13 16 27 H 0.06 1.40 6.42 -51.93 -0.33 1.07 16 28 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.10 1.01 5.82 -51.93 -0.30 0.70 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.90 7.05 -51.93 -0.37 0.53 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -32.41 275.46 -6.63 -39.04 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.66 Total: 5.58 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.18 Total: -17.64 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.19 Total: -40.14 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.46 Total: -8.72 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.41 -6.63 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds