Wall clock time and date at job start Mon Mar 30 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47641 * 184.99974 * 3 2 1 5 5 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 6 6 C 1.46905 * 110.99800 * 60.00278 * 5 2 1 7 7 C 1.53000 * 109.47234 * 179.97438 * 6 5 2 8 8 C 1.50695 * 109.46861 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00407 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99561 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99588 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00191 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47115 * 90.00019 * 12 10 8 14 14 H 1.48502 * 109.47404 * 209.99704 * 12 10 8 15 15 H 1.48491 * 109.47372 * 330.00167 * 12 10 8 16 16 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 17 17 C 1.52997 * 117.49576 * 3.74549 * 16 2 1 18 18 C 1.52998 * 117.49507 * 295.08473 * 16 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 23 23 H 1.09004 * 109.47313 * 64.99993 * 3 2 1 24 24 H 0.96695 * 114.00050 * 180.02562 * 4 3 2 25 25 H 1.00896 * 111.00594 * 296.04777 * 5 2 1 26 26 H 1.08993 * 109.47004 * 300.00108 * 6 5 2 27 27 H 1.09002 * 109.47091 * 59.99861 * 6 5 2 28 28 H 1.09001 * 109.47170 * 299.99770 * 7 6 5 29 29 H 1.08994 * 109.47243 * 59.99707 * 7 6 5 30 30 H 0.96997 * 119.99375 * 180.02562 * 11 10 8 31 31 H 1.09003 * 115.54997 * 149.41536 * 16 2 1 32 32 H 1.08991 * 117.50428 * 359.97438 * 17 16 2 33 33 H 1.09003 * 117.49788 * 145.03190 * 17 16 2 34 34 H 1.09001 * 117.49520 * 214.98230 * 18 16 2 35 35 H 1.09000 * 117.50495 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4643 1.4441 -0.1174 5 7 2.0196 -0.6926 -1.1994 6 6 1.5486 -0.0264 -2.4211 7 6 2.0782 -0.7742 -3.6463 8 6 1.5945 -0.0912 -4.8995 9 1 0.9720 0.7886 -4.8291 10 6 1.9475 -0.5889 -6.1359 11 7 1.5249 0.0070 -7.2297 12 14 3.0259 -2.1092 -6.2577 13 1 2.1696 -3.3221 -6.2900 14 1 3.8369 -2.0427 -7.4999 15 1 3.9282 -2.1716 -5.0801 16 6 2.0400 -0.7214 1.2492 17 6 0.9987 -1.3569 2.1726 18 6 1.7330 -0.0858 2.6067 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6054 1.9815 -0.8418 23 1 1.7517 1.9298 0.9314 24 1 3.8573 2.3276 -0.1237 25 1 1.7502 -1.6649 -1.1910 26 1 0.4588 -0.0265 -2.4378 27 1 1.9121 1.0011 -2.4379 28 1 3.1681 -0.7737 -3.6294 29 1 1.7151 -1.8018 -3.6298 30 1 1.7730 -0.3434 -8.0995 31 1 2.9949 -1.2352 1.1385 32 1 -0.0497 -1.2608 1.8904 33 1 1.2687 -2.2886 2.6698 34 1 2.4858 -0.1819 3.3891 35 1 1.1673 0.8459 2.6099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379385735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:17 Heat of formation + Delta-G solvation = -51.456459 kcal Electronic energy + Delta-G solvation = -14711.660570 eV Core-core repulsion = 12323.397663 eV Total energy + Delta-G solvation = -2388.262907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47886 -37.08772 -36.63619 -34.89178 -32.54301 -29.84753 -27.40770 -26.40992 -23.93756 -23.00756 -21.92070 -19.67293 -18.89488 -18.17277 -17.61165 -16.32815 -16.14987 -15.81528 -15.55839 -14.90934 -14.50366 -14.36558 -14.09785 -13.61049 -13.24240 -13.02325 -12.78872 -12.72366 -12.20674 -11.94916 -11.77107 -11.72684 -11.59423 -11.41078 -11.04284 -10.80727 -10.76633 -10.69909 -9.18145 -8.30958 -6.34941 1.34902 1.37907 1.51651 2.36225 2.90800 3.04661 3.18891 3.53579 3.76694 4.00388 4.15231 4.32427 4.35658 4.45233 4.47397 4.52459 4.59555 4.62264 4.78036 4.83491 4.99596 4.99864 5.04319 5.26012 5.30130 5.31346 5.42462 5.50883 5.64452 6.22851 6.29740 6.57879 6.73724 7.03291 7.30004 8.85705 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045639 B = 0.006816 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.361102 B = 4106.844988 C = 4199.752339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.140 3.860 3 C 0.090 3.910 4 O -0.570 6.570 5 N -0.676 5.676 6 C 0.090 3.910 7 C -0.003 4.003 8 C -0.532 4.532 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.952 3.048 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.252 1.252 16 C -0.144 4.144 17 C -0.181 4.181 18 C -0.165 4.165 19 H 0.048 0.952 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.067 0.933 24 H 0.384 0.616 25 H 0.338 0.662 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -0.751 20.216 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.049 3.951 3 C 0.012 3.988 4 O -0.376 6.376 5 N -0.307 5.307 6 C -0.039 4.039 7 C -0.041 4.041 8 C -0.570 4.570 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.776 3.224 13 H -0.189 1.189 14 H -0.208 1.208 15 H -0.176 1.176 16 C -0.162 4.162 17 C -0.218 4.218 18 C -0.202 4.202 19 H 0.067 0.933 20 H 0.100 0.900 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.232 0.768 25 H 0.156 0.844 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.234 -1.072 20.023 20.053 hybrid contribution -0.544 0.053 -0.820 0.985 sum -0.309 -1.018 19.203 19.233 Atomic orbital electron populations 1.22567 0.95625 1.03020 1.02605 1.20513 0.92090 0.93018 0.89525 1.22262 0.81820 0.95420 0.99279 1.86595 1.19817 1.34082 1.97126 1.60537 1.63570 1.05806 1.00739 1.21625 0.95889 0.97747 0.88652 1.19413 0.96442 0.95581 0.92643 1.21391 1.31520 1.12766 0.91337 0.94953 1.25971 0.97226 1.00650 0.95160 1.70064 1.47681 1.42859 0.98452 0.85621 0.79435 0.79241 0.78126 1.18939 1.20777 1.17617 1.22010 1.00009 1.04259 0.89944 1.23279 0.98121 0.97419 1.02943 1.22989 1.03376 0.97303 0.96527 0.93327 0.89994 0.91170 0.95238 0.91457 0.76797 0.84374 0.96068 0.92973 0.96520 0.96561 0.92417 0.88882 0.87683 0.88240 0.88124 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 6.80 71.98 0.49 -3.81 16 2 C 0.14 3.83 0.60 3.53 0.00 3.84 16 3 C 0.09 2.42 5.26 71.98 0.38 2.80 16 4 O -0.57 -16.66 13.19 -148.98 -1.96 -18.63 16 5 N -0.68 -23.55 5.86 -470.18 -2.75 -26.31 16 6 C 0.09 3.75 4.84 86.30 0.42 4.17 16 7 C 0.00 -0.15 4.30 29.85 0.13 -0.02 16 8 C -0.53 -31.79 9.66 25.60 0.25 -31.54 16 9 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 10 C 0.01 0.41 5.47 84.65 0.46 0.87 16 11 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 12 Si 0.95 46.03 27.47 68.60 1.88 47.91 16 13 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 16 C -0.14 -3.41 5.22 -10.79 -0.06 -3.46 16 17 C -0.18 -3.29 9.51 30.62 0.29 -3.00 16 18 C -0.16 -2.96 9.35 30.62 0.29 -2.67 16 19 H 0.05 1.34 6.40 -2.39 -0.02 1.32 16 20 H 0.08 1.55 7.18 -2.39 -0.02 1.53 16 21 H 0.07 1.60 7.23 -2.38 -0.02 1.58 16 22 H 0.03 0.87 6.68 -2.39 -0.02 0.85 16 23 H 0.07 1.40 6.82 -2.39 -0.02 1.39 16 24 H 0.38 7.73 9.12 -74.06 -0.68 7.06 16 25 H 0.34 11.16 8.72 -89.70 -0.78 10.38 16 26 H 0.02 0.88 6.30 -2.39 -0.02 0.87 16 27 H 0.05 2.30 6.42 -2.39 -0.02 2.28 16 28 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 29 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.10 1.78 5.82 -2.39 -0.01 1.77 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.60 7.05 -2.39 -0.02 1.58 16 Total: -1.00 -69.87 275.46 -0.31 -70.18 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.42 Total: 20.10 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 2.65 Total: -32.83 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.45 Total: -86.73 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -1.96 Total: -18.63 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.91 kcal Total: -69.87 -0.31 -70.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379385735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.719 kcal (2) G-P(sol) polarization free energy of solvation -69.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds