Wall clock time and date at job start Mon Mar 30 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.05738 * 2 1 4 4 C 1.54277 * 110.03088 * 238.58815 * 2 1 3 5 5 C 1.54887 * 104.19340 * 264.32527 * 4 2 1 6 6 C 1.54893 * 102.75252 * 322.05799 * 5 4 2 7 7 C 1.53877 * 110.03164 * 121.42341 * 2 1 3 8 8 O 1.42898 * 110.07145 * 359.97438 * 7 2 1 9 9 C 1.53000 * 110.02899 * 238.56552 * 7 2 1 10 10 N 1.46901 * 109.46769 * 186.37679 * 9 7 2 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47183 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99585 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47119 * 120.00029 * 16 14 12 19 19 H 1.48497 * 109.46822 * 239.99957 * 16 14 12 20 20 H 1.08998 * 109.46999 * 298.57814 * 1 2 3 21 21 H 1.08999 * 109.46818 * 58.57877 * 1 2 3 22 22 H 1.08997 * 109.47124 * 178.57687 * 1 2 3 23 23 H 1.09002 * 110.48454 * 145.65036 * 4 2 1 24 24 H 1.08998 * 110.48482 * 23.00296 * 4 2 1 25 25 H 1.09000 * 110.75674 * 203.74365 * 5 4 2 26 26 H 1.09001 * 110.75607 * 80.37473 * 5 4 2 27 27 H 1.08996 * 110.48802 * 279.26568 * 6 5 4 28 28 H 1.08995 * 110.48820 * 156.61740 * 6 5 4 29 29 H 0.96699 * 113.99518 * 179.28624 * 8 7 2 30 30 H 1.09002 * 109.47398 * 306.37974 * 9 7 2 31 31 H 1.09001 * 109.47194 * 66.38155 * 9 7 2 32 32 H 1.00899 * 111.00283 * 303.95539 * 10 9 7 33 33 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 34 34 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 35 35 H 0.97003 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7194 6 6 2.8874 -1.9408 0.7033 7 6 2.0571 -0.7537 1.2337 8 8 0.9641 -1.2331 2.0195 9 6 2.9409 0.1701 2.0741 10 7 3.5590 -0.5999 3.1618 11 6 4.4163 0.2568 3.9920 12 6 5.0321 -0.5661 5.0941 13 1 4.8085 -1.6200 5.1704 14 6 5.8800 0.0266 6.0056 15 7 6.1517 1.3099 5.9129 16 14 6.6426 -0.9934 7.3722 17 1 6.1801 -2.3998 7.2572 18 1 8.1224 -0.9475 7.2572 19 1 6.2311 -0.4435 8.6888 20 1 -0.3633 0.4916 0.9024 21 1 -0.3633 0.5358 -0.8770 22 1 -0.3633 -1.0273 -0.0255 23 1 2.9811 -0.3000 -1.5967 24 1 1.3061 -0.7695 -2.0256 25 1 3.0675 -2.6931 -1.3425 26 1 1.4030 -2.7651 -0.6754 27 1 3.9439 -1.6768 0.6570 28 1 2.7400 -2.8198 1.3307 29 1 1.2323 -1.7268 2.8065 30 1 3.7202 0.5993 1.4443 31 1 2.3326 0.9703 2.4956 32 1 2.8580 -1.0610 3.7222 33 1 5.2058 0.6869 3.3758 34 1 3.8179 1.0574 4.4267 35 1 6.7480 1.7270 6.5544 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382202682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:53 Heat of formation + Delta-G solvation = -74.099972 kcal Electronic energy + Delta-G solvation = -14717.751387 eV Core-core repulsion = 12328.506584 eV Total energy + Delta-G solvation = -2389.244804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44746 -35.25596 -34.38057 -32.34895 -30.89504 -28.85667 -26.33013 -25.35794 -22.77959 -21.49759 -20.38763 -19.19318 -16.79608 -15.86651 -15.52763 -15.42192 -14.54698 -14.33129 -13.47876 -13.27140 -12.74402 -12.68479 -12.32451 -12.25068 -12.19547 -11.35018 -11.23375 -11.01604 -10.81778 -10.78065 -10.70990 -10.49603 -10.40410 -10.24038 -9.84564 -9.52084 -9.10177 -8.51015 -7.36201 -6.05715 -4.08059 3.29531 3.36768 3.41607 4.40154 4.42847 4.70955 4.72896 5.07940 5.24340 5.30497 5.45368 5.53451 5.58697 5.69316 5.72434 5.83400 5.95521 6.01084 6.09016 6.13849 6.25274 6.27412 6.41510 6.50883 6.56417 6.65239 7.20660 7.37739 7.74352 7.96974 8.08836 8.30706 8.54954 9.01081 9.57127 11.05476 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055742 B = 0.006153 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.195496 B = 4549.298330 C = 4643.723159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.130 4.130 7 C 0.135 3.865 8 O -0.560 6.560 9 C 0.036 3.964 10 N -0.686 5.686 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.374 0.626 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.323 0.677 33 H 0.028 0.972 34 H -0.014 1.014 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -4.107 -11.584 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.162 4.162 6 C -0.168 4.168 7 C 0.095 3.905 8 O -0.366 6.366 9 C -0.095 4.095 10 N -0.317 5.317 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.222 0.778 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.139 0.861 33 H 0.046 0.954 34 H 0.004 0.996 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.386 -3.881 -12.352 15.426 hybrid contribution 0.276 -0.061 1.784 1.806 sum -8.109 -3.942 -10.568 13.892 Atomic orbital electron populations 1.21489 0.94267 1.01907 1.00614 1.21762 0.96846 0.98854 0.92926 0.90664 1.22439 1.00593 0.95898 0.96813 1.22494 1.00493 0.96403 0.96835 1.22840 1.00479 0.98051 0.95457 1.21890 0.85380 0.93007 0.90255 1.86483 1.33940 1.75401 1.40809 1.22621 0.96612 0.95004 0.95235 1.60739 1.23647 1.32619 1.14666 1.19558 0.91360 0.91197 0.91149 1.21212 1.27373 0.95897 1.10800 0.91901 1.25001 0.96589 0.94990 0.98044 1.69973 1.36631 1.10254 1.36873 0.86417 0.78968 0.80343 0.81539 1.19645 1.20976 1.21077 0.92455 0.93824 0.92382 0.91623 0.91730 0.91976 0.91799 0.90149 0.91260 0.77835 0.91044 0.95742 0.86064 0.95407 0.99581 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.08 37.16 0.30 -1.27 16 2 C -0.08 -1.12 3.16 -89.50 -0.28 -1.40 16 3 H 0.07 0.99 7.67 -51.93 -0.40 0.60 16 4 C -0.12 -1.38 6.37 -25.07 -0.16 -1.54 16 5 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 6 C -0.13 -1.86 5.63 -25.07 -0.14 -2.00 16 7 C 0.14 2.02 1.10 -89.50 -0.10 1.92 16 8 O -0.56 -8.35 11.12 -35.23 -0.39 -8.74 16 9 C 0.04 0.64 4.51 -3.82 -0.02 0.62 16 10 N -0.69 -14.33 6.00 -115.05 -0.69 -15.02 16 11 C 0.19 5.09 5.44 -4.97 -0.03 5.07 16 12 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H 0.06 0.77 7.87 -51.93 -0.41 0.37 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.74 7.87 -51.93 -0.41 0.34 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.26 7.85 -51.93 -0.41 0.86 16 28 H 0.07 0.99 8.05 -51.93 -0.42 0.58 16 29 H 0.37 4.97 7.66 45.56 0.35 5.32 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.32 6.34 7.33 -39.29 -0.29 6.05 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 280.64 15.07 4.23 4.23 Total: -1.00 -29.91 280.64 -7.47 -37.37 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.32 Total: 5.38 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.01 Total: -13.65 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.05 Total: -41.25 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.39 Total: -8.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.91 -7.47 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.725 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds