Wall clock time and date at job start Mon Mar 30 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.05738 * 2 1 4 4 C 1.54277 * 110.03088 * 238.58815 * 2 1 3 5 5 C 1.54887 * 104.19340 * 264.32527 * 4 2 1 6 6 C 1.54893 * 102.75252 * 322.05799 * 5 4 2 7 7 C 1.53877 * 110.03164 * 121.42341 * 2 1 3 8 8 O 1.42898 * 110.07145 * 359.97438 * 7 2 1 9 9 C 1.53000 * 110.02899 * 238.56552 * 7 2 1 10 10 N 1.46901 * 109.46769 * 186.37679 * 9 7 2 11 11 C 1.46906 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47183 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99585 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47119 * 120.00029 * 16 14 12 19 19 H 1.48497 * 109.46822 * 239.99957 * 16 14 12 20 20 H 1.08998 * 109.46999 * 298.57814 * 1 2 3 21 21 H 1.08999 * 109.46818 * 58.57877 * 1 2 3 22 22 H 1.08997 * 109.47124 * 178.57687 * 1 2 3 23 23 H 1.09002 * 110.48454 * 145.65036 * 4 2 1 24 24 H 1.08998 * 110.48482 * 23.00296 * 4 2 1 25 25 H 1.09000 * 110.75674 * 203.74365 * 5 4 2 26 26 H 1.09001 * 110.75607 * 80.37473 * 5 4 2 27 27 H 1.08996 * 110.48802 * 279.26568 * 6 5 4 28 28 H 1.08995 * 110.48820 * 156.61740 * 6 5 4 29 29 H 0.96699 * 113.99518 * 179.28624 * 8 7 2 30 30 H 1.09002 * 109.47398 * 306.37974 * 9 7 2 31 31 H 1.09001 * 109.47194 * 66.38155 * 9 7 2 32 32 H 1.00899 * 111.00283 * 303.95539 * 10 9 7 33 33 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 34 34 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 35 35 H 0.97003 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7194 6 6 2.8874 -1.9408 0.7033 7 6 2.0571 -0.7537 1.2337 8 8 0.9641 -1.2331 2.0195 9 6 2.9409 0.1701 2.0741 10 7 3.5590 -0.5999 3.1618 11 6 4.4163 0.2568 3.9920 12 6 5.0321 -0.5661 5.0941 13 1 4.8085 -1.6200 5.1704 14 6 5.8800 0.0266 6.0056 15 7 6.1517 1.3099 5.9129 16 14 6.6426 -0.9934 7.3722 17 1 6.1801 -2.3998 7.2572 18 1 8.1224 -0.9475 7.2572 19 1 6.2311 -0.4435 8.6888 20 1 -0.3633 0.4916 0.9024 21 1 -0.3633 0.5358 -0.8770 22 1 -0.3633 -1.0273 -0.0255 23 1 2.9811 -0.3000 -1.5967 24 1 1.3061 -0.7695 -2.0256 25 1 3.0675 -2.6931 -1.3425 26 1 1.4030 -2.7651 -0.6754 27 1 3.9439 -1.6768 0.6570 28 1 2.7400 -2.8198 1.3307 29 1 1.2323 -1.7268 2.8065 30 1 3.7202 0.5993 1.4443 31 1 2.3326 0.9703 2.4956 32 1 2.8580 -1.0610 3.7222 33 1 5.2058 0.6869 3.3758 34 1 3.8179 1.0574 4.4267 35 1 6.7480 1.7270 6.5544 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382202682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:53 Heat of formation + Delta-G solvation = -95.381633 kcal Electronic energy + Delta-G solvation = -14718.674229 eV Core-core repulsion = 12328.506584 eV Total energy + Delta-G solvation = -2390.167646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63817 -36.84447 -35.77761 -34.40161 -31.93450 -30.46693 -27.98831 -26.60952 -24.39514 -23.26503 -21.56814 -20.29425 -18.76813 -17.36342 -16.93469 -16.59095 -16.40542 -15.87539 -14.96741 -14.70766 -14.26111 -13.99351 -13.75703 -13.58010 -13.32179 -13.18376 -12.79876 -12.71760 -12.51328 -12.15489 -12.06295 -11.78192 -11.52099 -11.48629 -11.35678 -11.09901 -10.72397 -10.64929 -9.20393 -8.25064 -6.36806 1.40945 1.41505 1.55551 2.38557 3.08677 3.29392 3.37095 3.66504 3.88661 3.92195 4.26689 4.44443 4.50690 4.51276 4.64705 4.71006 4.75713 4.89668 5.03391 5.05797 5.09572 5.13795 5.20248 5.24941 5.29792 5.41604 5.49690 5.58359 5.59952 5.97188 6.34498 6.63613 6.81460 6.85565 7.34556 8.87055 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055742 B = 0.006153 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.195496 B = 4549.298330 C = 4643.723159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.131 4.131 7 C 0.141 3.859 8 O -0.563 6.563 9 C 0.038 3.962 10 N -0.677 5.677 11 C 0.208 3.792 12 C -0.534 4.534 13 H 0.068 0.932 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.041 0.959 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.379 0.621 30 H 0.065 0.935 31 H 0.012 0.988 32 H 0.332 0.668 33 H -0.001 1.001 34 H -0.043 1.043 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -5.517 -12.157 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.100 3.900 8 O -0.370 6.370 9 C -0.092 4.092 10 N -0.308 5.308 11 C 0.080 3.920 12 C -0.572 4.572 13 H 0.086 0.914 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.060 0.940 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.150 0.850 33 H 0.017 0.983 34 H -0.025 1.025 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.858 -5.306 -12.939 16.554 hybrid contribution 0.391 0.418 1.940 2.022 sum -8.467 -4.888 -10.999 14.716 Atomic orbital electron populations 1.21441 0.93484 1.01921 1.00858 1.21833 0.97508 0.98722 0.92783 0.91013 1.22443 1.01359 0.95123 0.96341 1.22469 1.00973 0.96950 0.95144 1.22798 0.99350 0.97433 0.97307 1.21870 0.85023 0.92828 0.90257 1.86487 1.33878 1.75417 1.41181 1.22703 0.96683 0.95345 0.94475 1.60592 1.24061 1.31795 1.14321 1.19209 0.90971 0.90880 0.90921 1.21564 1.27842 0.96287 1.11538 0.91408 1.25997 0.96947 0.96178 1.00750 1.70104 1.37309 1.12158 1.38067 0.85234 0.77917 0.78920 0.77918 1.18432 1.20403 1.20358 0.94011 0.91707 0.92510 0.91206 0.89683 0.90571 0.91178 0.91932 0.91476 0.77181 0.91702 0.96984 0.85012 0.98280 1.02500 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 8.08 71.98 0.58 -2.18 16 2 C -0.09 -2.23 3.16 -10.07 -0.03 -2.26 16 3 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 4 C -0.12 -2.35 6.37 31.67 0.20 -2.15 16 5 C -0.12 -2.53 6.91 31.89 0.22 -2.31 16 6 C -0.13 -3.59 5.63 31.67 0.18 -3.41 16 7 C 0.14 4.11 1.10 -10.07 -0.01 4.10 16 8 O -0.56 -16.23 11.12 -148.98 -1.66 -17.89 16 9 C 0.04 1.39 4.51 86.30 0.39 1.78 16 10 N -0.68 -28.77 6.00 -517.91 -3.11 -31.88 16 11 C 0.21 11.30 5.44 85.56 0.47 11.76 16 12 C -0.53 -30.50 9.32 25.60 0.24 -30.26 16 13 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.94 -57.09 13.29 21.45 0.28 -56.80 16 16 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H 0.04 1.08 7.87 -2.39 -0.02 1.06 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.32 7.87 -2.39 -0.02 1.30 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.08 1.43 7.84 -2.39 -0.02 1.41 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.94 7.85 -2.39 -0.02 1.92 16 28 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 29 H 0.38 9.78 7.66 -74.06 -0.57 9.21 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.33 13.11 7.33 -89.69 -0.66 12.45 16 33 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -63.86 280.64 0.08 -63.78 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.17 Total: 21.02 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 2.69 Total: -24.50 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.82 Total: -88.68 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.66 Total: -17.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.86 0.08 -63.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.598 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds