Wall clock time and date at job start Mon Mar 30 2020 04:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.05611 * 2 1 4 4 C 1.54265 * 110.02836 * 121.41536 * 2 1 3 5 5 C 1.55028 * 104.28349 * 95.76775 * 4 2 1 6 6 C 1.54894 * 102.68390 * 37.75958 * 5 4 2 7 7 C 1.53876 * 110.02829 * 238.57818 * 2 1 3 8 8 O 1.42894 * 110.03663 * 0.02562 * 7 2 1 9 9 C 1.52999 * 110.06800 * 121.41161 * 7 2 1 10 10 N 1.46908 * 109.46853 * 178.64037 * 9 7 2 11 11 C 1.46907 * 110.99986 * 179.97438 * 10 9 7 12 12 C 1.50689 * 109.47093 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00119 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99793 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99854 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47053 * 90.00485 * 16 14 12 18 18 H 1.48504 * 109.47277 * 210.00333 * 16 14 12 19 19 H 1.48495 * 109.47062 * 330.00468 * 16 14 12 20 20 H 1.09002 * 109.47278 * 181.41890 * 1 2 3 21 21 H 1.09005 * 109.47082 * 301.42122 * 1 2 3 22 22 H 1.08999 * 109.46693 * 61.41742 * 1 2 3 23 23 H 1.09003 * 110.48518 * 214.35041 * 4 2 1 24 24 H 1.08997 * 110.49147 * 336.86095 * 4 2 1 25 25 H 1.09009 * 110.69793 * 279.51331 * 5 4 2 26 26 H 1.08990 * 110.87911 * 156.09758 * 5 4 2 27 27 H 1.09002 * 110.48891 * 203.48495 * 6 5 4 28 28 H 1.08998 * 110.48494 * 80.97583 * 6 5 4 29 29 H 0.96701 * 114.00524 * 181.37930 * 8 7 2 30 30 H 1.08995 * 109.47546 * 298.64256 * 9 7 2 31 31 H 1.09002 * 109.47380 * 58.64545 * 9 7 2 32 32 H 1.00898 * 111.00049 * 303.95535 * 10 9 7 33 33 H 1.08996 * 109.46944 * 300.00404 * 11 10 9 34 34 H 1.09003 * 109.46585 * 59.99925 * 11 10 9 35 35 H 0.97006 * 119.99412 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 2.3312 -2.1914 0.7203 6 6 2.8874 -1.9408 -0.7034 7 6 2.0571 -0.7537 -1.2337 8 8 0.9635 -1.2327 -2.0189 9 6 2.9406 0.1695 -2.0751 10 7 3.4624 -0.5720 -3.2310 11 6 4.3167 0.2850 -4.0641 12 6 4.8318 -0.5081 -5.2373 13 1 4.5528 -1.5451 -5.3525 14 6 5.6601 0.0899 -6.1634 15 7 6.1091 -0.6022 -7.1876 16 14 6.1431 1.8832 -5.9639 17 1 7.3885 1.9739 -5.1600 18 1 6.3725 2.4859 -7.3016 19 1 5.0526 2.6155 -5.2714 20 1 -0.3634 -1.0274 0.0254 21 1 -0.3633 0.5358 0.8770 22 1 -0.3633 0.4917 -0.9024 23 1 2.9811 -0.3001 1.5967 24 1 1.3070 -0.7675 2.0264 25 1 1.4069 -2.7678 0.6780 26 1 3.0726 -2.6935 1.3418 27 1 2.7401 -2.8199 -1.3308 28 1 3.9442 -1.6776 -0.6593 29 1 1.2308 -1.7352 -2.8006 30 1 2.3516 1.0179 -2.4235 31 1 3.7719 0.5289 -1.4686 32 1 3.9582 -1.3997 -2.9358 33 1 3.7369 1.1339 -4.4262 34 1 5.1576 0.6456 -3.4715 35 1 6.6922 -0.1815 -7.8389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382202688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:56 Heat of formation + Delta-G solvation = -70.373479 kcal Electronic energy + Delta-G solvation = -14759.897101 eV Core-core repulsion = 12370.813891 eV Total energy + Delta-G solvation = -2389.083211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50986 -35.28809 -34.42482 -32.35884 -30.99913 -29.17685 -26.61092 -25.54201 -22.80600 -21.37592 -20.37055 -19.20284 -16.98890 -15.99568 -15.68783 -15.48722 -14.67034 -14.14837 -13.62354 -13.42291 -12.90029 -12.75536 -12.46009 -12.33742 -12.32225 -11.77768 -11.37228 -11.14966 -10.87850 -10.85403 -10.71334 -10.57317 -10.47848 -10.11732 -9.79651 -9.45961 -9.23774 -8.63046 -7.58224 -6.08977 -4.07219 3.26104 3.33981 3.36920 4.39409 4.42054 4.59395 4.60555 5.01693 5.08402 5.23968 5.38601 5.40186 5.46125 5.60095 5.64067 5.68029 5.83999 5.92414 5.99903 6.04548 6.08274 6.16988 6.25701 6.33710 6.45114 6.57705 6.73802 6.97167 7.55822 7.81729 8.12398 8.26294 8.60312 8.98159 9.52857 11.04233 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050650 B = 0.006634 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.685194 B = 4219.660742 C = 4323.841717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.151 4.151 7 C 0.140 3.860 8 O -0.553 6.553 9 C 0.032 3.968 10 N -0.681 5.681 11 C 0.165 3.835 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.267 1.267 20 H 0.058 0.942 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.384 0.616 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.333 0.667 33 H 0.027 0.973 34 H -0.021 1.021 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 0.159 15.835 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.189 4.189 7 C 0.099 3.901 8 O -0.361 6.361 9 C -0.098 4.098 10 N -0.311 5.311 11 C 0.037 3.963 12 C -0.555 4.555 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 H 0.077 0.923 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.151 0.849 33 H 0.045 0.955 34 H -0.003 1.003 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.414 0.592 15.726 17.845 hybrid contribution 1.648 0.811 0.021 1.836 sum -6.766 1.403 15.746 17.196 Atomic orbital electron populations 1.21485 0.94029 1.02026 1.00698 1.21760 0.97121 0.98751 0.92781 0.90741 1.22470 1.00605 0.95770 0.96998 1.22445 1.00681 0.96577 0.96005 1.23068 0.99818 0.99046 0.96967 1.21727 0.86087 0.92215 0.90064 1.86394 1.32932 1.75047 1.41678 1.22693 0.97278 0.97250 0.92574 1.60450 1.43008 1.09272 1.18413 1.19995 0.89976 0.93706 0.92578 1.21047 1.28423 0.99621 1.06455 0.90288 1.24907 0.95602 0.97814 0.94999 1.69901 1.34234 1.36651 1.13036 0.86814 0.79199 0.85830 0.77598 1.20366 1.21073 1.19192 0.92309 0.93881 0.92224 0.91803 0.91534 0.91409 0.91878 0.90720 0.91203 0.76698 0.91103 0.95641 0.84903 0.95528 1.00329 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.08 37.16 0.30 -1.21 16 2 C -0.09 -1.07 3.16 -89.50 -0.28 -1.35 16 3 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 4 C -0.12 -1.30 6.37 -25.00 -0.16 -1.45 16 5 C -0.12 -1.32 6.92 -24.66 -0.17 -1.49 16 6 C -0.15 -1.96 5.06 -25.07 -0.13 -2.08 16 7 C 0.14 2.01 1.10 -89.50 -0.10 1.91 16 8 O -0.55 -8.47 11.12 -35.23 -0.39 -8.86 16 9 C 0.03 0.55 4.52 -3.82 -0.02 0.53 16 10 N -0.68 -13.74 5.93 -115.06 -0.68 -14.43 16 11 C 0.17 4.03 4.51 -4.98 -0.02 4.01 16 12 C -0.52 -14.79 9.87 -34.45 -0.34 -15.13 16 13 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 16 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 25 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 28 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 29 H 0.38 5.70 8.53 45.56 0.39 6.09 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.33 6.47 7.62 -39.29 -0.30 6.17 16 33 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 34 H -0.02 -0.51 7.57 -51.93 -0.39 -0.90 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -30.12 277.46 -7.05 -37.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.25 Total: 6.14 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.01 Total: -14.37 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.09 Total: -41.31 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.39 Total: -8.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.12 -7.05 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.201 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds