Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.05611 * 2 1 4 4 C 1.54265 * 110.02836 * 121.41536 * 2 1 3 5 5 C 1.55028 * 104.28349 * 95.76775 * 4 2 1 6 6 C 1.54894 * 102.68390 * 37.75958 * 5 4 2 7 7 C 1.53876 * 110.02829 * 238.57818 * 2 1 3 8 8 O 1.42894 * 110.03663 * 0.02562 * 7 2 1 9 9 C 1.52999 * 110.06800 * 121.41161 * 7 2 1 10 10 N 1.46908 * 109.46853 * 178.64037 * 9 7 2 11 11 C 1.46907 * 110.99986 * 179.97438 * 10 9 7 12 12 C 1.50689 * 109.47093 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00119 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99793 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99854 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47053 * 90.00485 * 16 14 12 18 18 H 1.48504 * 109.47277 * 210.00333 * 16 14 12 19 19 H 1.48495 * 109.47062 * 330.00468 * 16 14 12 20 20 H 1.09002 * 109.47278 * 181.41890 * 1 2 3 21 21 H 1.09005 * 109.47082 * 301.42122 * 1 2 3 22 22 H 1.08999 * 109.46693 * 61.41742 * 1 2 3 23 23 H 1.09003 * 110.48518 * 214.35041 * 4 2 1 24 24 H 1.08997 * 110.49147 * 336.86095 * 4 2 1 25 25 H 1.09009 * 110.69793 * 279.51331 * 5 4 2 26 26 H 1.08990 * 110.87911 * 156.09758 * 5 4 2 27 27 H 1.09002 * 110.48891 * 203.48495 * 6 5 4 28 28 H 1.08998 * 110.48494 * 80.97583 * 6 5 4 29 29 H 0.96701 * 114.00524 * 181.37930 * 8 7 2 30 30 H 1.08995 * 109.47546 * 298.64256 * 9 7 2 31 31 H 1.09002 * 109.47380 * 58.64545 * 9 7 2 32 32 H 1.00898 * 111.00049 * 303.95535 * 10 9 7 33 33 H 1.08996 * 109.46944 * 300.00404 * 11 10 9 34 34 H 1.09003 * 109.46585 * 59.99925 * 11 10 9 35 35 H 0.97006 * 119.99412 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 2.3312 -2.1914 0.7203 6 6 2.8874 -1.9408 -0.7034 7 6 2.0571 -0.7537 -1.2337 8 8 0.9635 -1.2327 -2.0189 9 6 2.9406 0.1695 -2.0751 10 7 3.4624 -0.5720 -3.2310 11 6 4.3167 0.2850 -4.0641 12 6 4.8318 -0.5081 -5.2373 13 1 4.5528 -1.5451 -5.3525 14 6 5.6601 0.0899 -6.1634 15 7 6.1091 -0.6022 -7.1876 16 14 6.1431 1.8832 -5.9639 17 1 7.3885 1.9739 -5.1600 18 1 6.3725 2.4859 -7.3016 19 1 5.0526 2.6155 -5.2714 20 1 -0.3634 -1.0274 0.0254 21 1 -0.3633 0.5358 0.8770 22 1 -0.3633 0.4917 -0.9024 23 1 2.9811 -0.3001 1.5967 24 1 1.3070 -0.7675 2.0264 25 1 1.4069 -2.7678 0.6780 26 1 3.0726 -2.6935 1.3418 27 1 2.7401 -2.8199 -1.3308 28 1 3.9442 -1.6776 -0.6593 29 1 1.2308 -1.7352 -2.8006 30 1 2.3516 1.0179 -2.4235 31 1 3.7719 0.5289 -1.4686 32 1 3.9582 -1.3997 -2.9358 33 1 3.7369 1.1339 -4.4262 34 1 5.1576 0.6456 -3.4715 35 1 6.6922 -0.1815 -7.8389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382202688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -92.614051 kcal Electronic energy + Delta-G solvation = -14760.861525 eV Core-core repulsion = 12370.813891 eV Total energy + Delta-G solvation = -2390.047634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61926 -36.84862 -35.68889 -34.45663 -31.97059 -30.78852 -28.13969 -26.68185 -24.16519 -23.16666 -21.51015 -20.24338 -19.07434 -17.41244 -16.81432 -16.65783 -16.24036 -15.91989 -15.29994 -14.61451 -14.43545 -13.98127 -13.88185 -13.72788 -13.36670 -13.23812 -12.85501 -12.68852 -12.45491 -12.12707 -11.88499 -11.81179 -11.59979 -11.48842 -11.38114 -11.14301 -10.84692 -10.60761 -9.24610 -8.32982 -6.37653 1.31858 1.34469 1.45415 2.31291 3.00908 3.30223 3.36274 3.61546 3.87653 3.94612 4.31734 4.35479 4.43817 4.50257 4.65379 4.68737 4.70165 4.76369 4.92422 5.00509 5.00778 5.06585 5.09945 5.17714 5.27998 5.38047 5.45060 5.48609 5.60569 5.88376 6.48553 6.59098 6.71891 6.93658 7.27431 8.83559 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050650 B = 0.006634 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.685194 B = 4219.660742 C = 4323.841717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.152 4.152 7 C 0.140 3.860 8 O -0.561 6.561 9 C 0.034 3.966 10 N -0.684 5.684 11 C 0.175 3.825 12 C -0.529 4.529 13 H 0.040 0.960 14 C 0.009 3.991 15 N -0.945 5.945 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.254 1.254 20 H 0.052 0.948 21 H 0.064 0.936 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.383 0.617 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.338 0.662 33 H 0.022 0.978 34 H -0.015 1.015 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 1.424 17.919 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.190 4.190 7 C 0.099 3.901 8 O -0.368 6.368 9 C -0.095 4.095 10 N -0.315 5.315 11 C 0.047 3.953 12 C -0.567 4.567 13 H 0.059 0.941 14 C -0.189 4.189 15 N -0.585 5.585 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.177 1.177 20 H 0.071 0.929 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.232 0.768 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.156 0.844 33 H 0.040 0.960 34 H 0.003 0.997 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.561 1.848 17.836 19.870 hybrid contribution 1.648 0.327 -0.645 1.800 sum -6.913 2.175 17.191 18.656 Atomic orbital electron populations 1.21440 0.93745 1.01752 1.00846 1.21830 0.97380 0.98907 0.92603 0.90493 1.22468 1.01460 0.94964 0.96401 1.22437 1.00983 0.97130 0.94694 1.23050 0.99444 0.98168 0.98343 1.21843 0.85695 0.92453 0.90141 1.86401 1.33557 1.75036 1.41800 1.22769 0.97708 0.97338 0.91728 1.60310 1.42053 1.09214 1.19921 1.19738 0.90444 0.93317 0.91819 1.21317 1.28609 0.98522 1.08250 0.94140 1.25862 0.95504 1.03041 0.94466 1.70048 1.35266 1.39035 1.14200 0.85676 0.79485 0.79480 0.78036 1.19016 1.20489 1.17743 0.92871 0.91738 0.93957 0.90917 0.89844 0.91410 0.90340 0.91264 0.91532 0.76838 0.92071 0.94748 0.84445 0.96024 0.99707 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.08 71.98 0.58 -2.10 16 2 C -0.09 -2.01 3.16 -10.07 -0.03 -2.04 16 3 H 0.08 1.72 7.67 -2.39 -0.02 1.70 16 4 C -0.12 -2.11 6.37 31.72 0.20 -1.90 16 5 C -0.11 -2.24 6.92 31.94 0.22 -2.02 16 6 C -0.15 -3.72 5.06 31.67 0.16 -3.56 16 7 C 0.14 3.82 1.10 -10.07 -0.01 3.81 16 8 O -0.56 -16.86 11.12 -148.98 -1.66 -18.51 16 9 C 0.03 1.13 4.52 86.30 0.39 1.52 16 10 N -0.68 -27.44 5.93 -517.92 -3.07 -30.52 16 11 C 0.18 8.46 4.51 85.55 0.39 8.84 16 12 C -0.53 -30.76 9.87 25.60 0.25 -30.50 16 13 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 14 C 0.01 0.53 5.47 84.65 0.46 1.00 16 15 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 16 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 20 H 0.05 1.23 7.87 -2.39 -0.02 1.21 16 21 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.04 1.07 7.87 -2.39 -0.02 1.05 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.27 7.84 -2.39 -0.02 1.25 16 25 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 28 H 0.07 1.67 7.74 -2.39 -0.02 1.65 16 29 H 0.38 11.42 8.53 -74.06 -0.63 10.79 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.34 13.11 7.62 -89.70 -0.68 12.42 16 33 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 34 H -0.01 -0.69 7.57 -2.39 -0.02 -0.71 16 35 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -64.39 277.46 -0.24 -64.63 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.31 Total: 24.01 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 2.61 Total: -26.96 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.77 Total: -89.38 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.66 Total: -18.51 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -64.39 -0.24 -64.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.982 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds