Wall clock time and date at job start Mon Mar 30 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.05794 * 2 1 4 4 C 1.54271 * 110.03005 * 121.42174 * 2 1 3 5 5 C 1.54890 * 104.19419 * 142.89119 * 4 2 1 6 6 C 1.54882 * 102.75002 * 322.05410 * 5 4 2 7 7 C 1.53883 * 110.03033 * 238.58251 * 2 1 3 8 8 O 1.42900 * 110.06912 * 121.40982 * 7 2 1 9 9 C 1.52994 * 110.02971 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46884 * 186.37633 * 9 7 2 11 11 C 1.46906 * 111.00346 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47358 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.08991 * 109.47453 * 181.41076 * 1 2 3 21 21 H 1.08998 * 109.46971 * 301.41496 * 1 2 3 22 22 H 1.09002 * 109.46722 * 61.41190 * 1 2 3 23 23 H 1.09002 * 110.48351 * 24.21470 * 4 2 1 24 24 H 1.08996 * 110.48440 * 261.57160 * 4 2 1 25 25 H 1.09007 * 110.75150 * 203.73927 * 5 4 2 26 26 H 1.09002 * 110.75751 * 80.37526 * 5 4 2 27 27 H 1.08995 * 110.49052 * 279.26458 * 6 5 4 28 28 H 1.09003 * 110.60121 * 156.67804 * 6 5 4 29 29 H 0.96697 * 113.99611 * 179.27887 * 8 7 2 30 30 H 1.08996 * 109.47710 * 66.37707 * 9 7 2 31 31 H 1.08999 * 109.47499 * 306.37559 * 9 7 2 32 32 H 1.00899 * 111.00470 * 303.95185 * 10 9 7 33 33 H 1.09001 * 109.46887 * 60.00315 * 11 10 9 34 34 H 1.08993 * 109.46896 * 299.99985 * 11 10 9 35 35 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 1.2368 5 6 3.3136 -1.5009 0.7190 6 6 2.8874 -1.9408 -0.7035 7 6 2.0571 -0.7536 -1.2338 8 8 2.8823 0.1087 -2.0196 9 6 0.8861 -1.2663 -2.0744 10 7 1.3972 -2.1110 -3.1622 11 6 0.2983 -2.6230 -3.9920 12 6 0.8601 -3.4826 -5.0950 13 1 1.9267 -3.6338 -5.1716 14 6 0.0123 -4.0768 -6.0056 15 7 -1.2865 -3.8930 -5.9119 16 14 0.7086 -5.1428 -7.3723 17 1 -0.4022 -5.6603 -8.2112 18 1 1.4545 -6.2822 -6.7802 19 1 1.6271 -4.3332 -8.2126 20 1 -0.3634 -1.0272 0.0253 21 1 -0.3633 0.5356 0.8770 22 1 -0.3633 0.4918 -0.9024 23 1 1.3141 -1.4661 1.5965 24 1 2.3297 -0.0538 2.0255 25 1 3.5324 -2.3681 1.3422 26 1 4.1710 -0.8293 0.6751 27 1 2.2770 -2.8426 -0.6572 28 1 3.7623 -2.1054 -1.3324 29 1 3.2540 -0.3125 -2.8066 30 1 0.3434 -0.4203 -2.4958 31 1 0.2154 -1.8511 -1.4449 32 1 2.0710 -1.6108 -3.7225 33 1 -0.2488 -1.7865 -4.4267 34 1 -0.3760 -3.2172 -3.3755 35 1 -1.6481 -3.3397 -5.2020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382202690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:58 Heat of formation + Delta-G solvation = -74.157036 kcal Electronic energy + Delta-G solvation = -14815.913659 eV Core-core repulsion = 12426.666381 eV Total energy + Delta-G solvation = -2389.247278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60070 -35.33879 -34.65309 -32.51430 -31.34198 -28.68553 -25.94456 -24.77286 -23.24621 -21.84336 -20.76111 -18.72694 -17.14876 -16.38354 -15.65262 -15.28303 -14.50275 -14.03399 -13.72716 -13.62412 -13.11650 -12.82331 -12.33544 -12.09014 -12.03818 -11.48597 -11.19129 -11.18020 -10.89884 -10.78946 -10.66559 -10.60744 -10.47760 -10.12199 -9.99407 -9.57192 -8.64026 -8.44031 -7.47715 -6.40568 -4.09918 3.43174 3.45544 3.64173 4.30342 4.50014 4.65619 4.66380 5.00982 5.14180 5.35184 5.37501 5.44873 5.48051 5.53918 5.67250 5.74724 5.86817 5.92965 6.00254 6.08436 6.10124 6.15553 6.35115 6.41150 6.49400 6.52081 6.90170 7.10585 7.70635 7.88986 8.07839 8.38271 8.52828 8.83382 9.62103 10.99219 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049847 B = 0.006568 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.585245 B = 4261.746526 C = 4475.679352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.131 4.131 7 C 0.134 3.866 8 O -0.565 6.565 9 C 0.032 3.968 10 N -0.681 5.681 11 C 0.185 3.815 12 C -0.597 4.597 13 H 0.056 0.944 14 C 0.014 3.986 15 N -0.913 5.913 16 Si 1.074 2.926 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.288 1.288 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.376 0.624 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.325 0.675 33 H -0.024 1.024 34 H 0.018 0.982 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 6.242 11.904 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.169 4.169 7 C 0.093 3.907 8 O -0.372 6.372 9 C -0.098 4.098 10 N -0.312 5.312 11 C 0.058 3.942 12 C -0.635 4.635 13 H 0.074 0.926 14 C -0.189 4.189 15 N -0.549 5.549 16 Si 0.902 3.098 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.214 1.214 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.141 0.859 33 H -0.007 1.007 34 H 0.036 0.964 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.838 5.169 11.447 13.850 hybrid contribution 0.234 1.355 0.383 1.427 sum 6.072 6.524 11.830 14.811 Atomic orbital electron populations 1.21988 0.94658 1.02243 1.01680 1.21661 0.95593 1.00013 0.92894 0.90145 1.22440 0.97619 0.98844 0.96683 1.22497 0.97489 0.99563 0.96769 1.22834 1.00031 0.98435 0.95570 1.21940 0.89598 0.88877 0.90245 1.86457 1.67904 1.41832 1.40990 1.22797 0.96328 0.95629 0.95052 1.60630 1.17590 1.38473 1.14482 1.19643 0.89235 0.93720 0.91600 1.21994 0.95481 1.32961 1.13084 0.92581 1.25883 0.94664 0.97959 1.00434 1.70796 1.12232 1.37797 1.34076 0.83471 0.75119 0.75862 0.75356 1.20793 1.21349 1.21448 0.91970 0.92783 0.92218 0.91386 0.91818 0.91809 0.91709 0.90176 0.91213 0.77594 0.95574 0.90521 0.85856 1.00662 0.96389 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.88 37.16 0.29 -1.57 16 2 C -0.08 -1.10 3.31 -89.49 -0.30 -1.39 16 3 H 0.08 1.10 7.96 -51.93 -0.41 0.68 16 4 C -0.12 -1.36 6.36 -25.07 -0.16 -1.52 16 5 C -0.13 -1.51 6.91 -24.74 -0.17 -1.68 16 6 C -0.13 -1.89 5.63 -25.08 -0.14 -2.04 16 7 C 0.13 2.04 1.13 -89.50 -0.10 1.94 16 8 O -0.57 -8.84 12.90 -35.23 -0.45 -9.29 16 9 C 0.03 0.57 3.57 -3.83 -0.01 0.56 16 10 N -0.68 -14.41 6.00 -115.06 -0.69 -15.10 16 11 C 0.19 4.85 4.75 -4.97 -0.02 4.83 16 12 C -0.60 -17.12 9.32 -34.44 -0.32 -17.44 16 13 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 14 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 15 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 16 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.80 6.92 -51.93 -0.36 0.44 16 23 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 28 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 29 H 0.38 5.20 7.66 45.56 0.35 5.55 16 30 H 0.03 0.49 7.13 -51.93 -0.37 0.12 16 31 H 0.08 1.39 6.33 -51.93 -0.33 1.06 16 32 H 0.32 6.53 7.33 -39.29 -0.29 6.25 16 33 H -0.02 -0.67 8.01 -51.93 -0.42 -1.09 16 34 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 35 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 LS Contribution 275.33 15.07 4.15 4.15 Total: -1.00 -30.96 275.33 -7.36 -38.32 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.01 Total: 6.99 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.03 Total: -18.00 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.07 Total: -42.47 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.45 Total: -9.29 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.96 -7.36 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.839 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds