Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.05794 * 2 1 4 4 C 1.54271 * 110.03005 * 121.42174 * 2 1 3 5 5 C 1.54890 * 104.19419 * 142.89119 * 4 2 1 6 6 C 1.54882 * 102.75002 * 322.05410 * 5 4 2 7 7 C 1.53883 * 110.03033 * 238.58251 * 2 1 3 8 8 O 1.42900 * 110.06912 * 121.40982 * 7 2 1 9 9 C 1.52994 * 110.02971 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46884 * 186.37633 * 9 7 2 11 11 C 1.46906 * 111.00346 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47358 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.08991 * 109.47453 * 181.41076 * 1 2 3 21 21 H 1.08998 * 109.46971 * 301.41496 * 1 2 3 22 22 H 1.09002 * 109.46722 * 61.41190 * 1 2 3 23 23 H 1.09002 * 110.48351 * 24.21470 * 4 2 1 24 24 H 1.08996 * 110.48440 * 261.57160 * 4 2 1 25 25 H 1.09007 * 110.75150 * 203.73927 * 5 4 2 26 26 H 1.09002 * 110.75751 * 80.37526 * 5 4 2 27 27 H 1.08995 * 110.49052 * 279.26458 * 6 5 4 28 28 H 1.09003 * 110.60121 * 156.67804 * 6 5 4 29 29 H 0.96697 * 113.99611 * 179.27887 * 8 7 2 30 30 H 1.08996 * 109.47710 * 66.37707 * 9 7 2 31 31 H 1.08999 * 109.47499 * 306.37559 * 9 7 2 32 32 H 1.00899 * 111.00470 * 303.95185 * 10 9 7 33 33 H 1.09001 * 109.46887 * 60.00315 * 11 10 9 34 34 H 1.08993 * 109.46896 * 299.99985 * 11 10 9 35 35 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 1.2368 5 6 3.3136 -1.5009 0.7190 6 6 2.8874 -1.9408 -0.7035 7 6 2.0571 -0.7536 -1.2338 8 8 2.8823 0.1087 -2.0196 9 6 0.8861 -1.2663 -2.0744 10 7 1.3972 -2.1110 -3.1622 11 6 0.2983 -2.6230 -3.9920 12 6 0.8601 -3.4826 -5.0950 13 1 1.9267 -3.6338 -5.1716 14 6 0.0123 -4.0768 -6.0056 15 7 -1.2865 -3.8930 -5.9119 16 14 0.7086 -5.1428 -7.3723 17 1 -0.4022 -5.6603 -8.2112 18 1 1.4545 -6.2822 -6.7802 19 1 1.6271 -4.3332 -8.2126 20 1 -0.3634 -1.0272 0.0253 21 1 -0.3633 0.5356 0.8770 22 1 -0.3633 0.4918 -0.9024 23 1 1.3141 -1.4661 1.5965 24 1 2.3297 -0.0538 2.0255 25 1 3.5324 -2.3681 1.3422 26 1 4.1710 -0.8293 0.6751 27 1 2.2770 -2.8426 -0.6572 28 1 3.7623 -2.1054 -1.3324 29 1 3.2540 -0.3125 -2.8066 30 1 0.3434 -0.4203 -2.4958 31 1 0.2154 -1.8511 -1.4449 32 1 2.0710 -1.6108 -3.7225 33 1 -0.2488 -1.7865 -4.4267 34 1 -0.3760 -3.2172 -3.3755 35 1 -1.6481 -3.3397 -5.2020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382202690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = -96.839321 kcal Electronic energy + Delta-G solvation = -14816.897237 eV Core-core repulsion = 12426.666381 eV Total energy + Delta-G solvation = -2390.230856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81293 -37.00039 -36.05032 -34.53920 -32.43742 -30.19687 -27.70437 -25.93314 -24.90916 -23.75822 -21.83835 -19.96583 -19.12317 -17.72716 -17.07634 -16.65240 -15.91730 -15.72463 -15.58797 -14.73981 -14.53948 -14.25315 -13.93937 -13.67556 -13.30981 -13.00038 -12.90027 -12.59065 -12.43356 -12.33187 -11.92831 -11.89137 -11.63687 -11.48252 -11.26806 -10.97676 -10.65370 -10.64259 -9.32322 -8.74327 -6.45775 1.53345 1.61960 1.81621 2.54477 3.10581 3.15628 3.27037 3.58424 3.79486 3.82796 4.17093 4.34379 4.39381 4.42759 4.50011 4.59923 4.69945 4.76132 4.83753 4.91818 4.93009 4.99929 5.03006 5.18266 5.23479 5.29869 5.35079 5.49156 5.65610 5.94926 6.31533 6.46376 6.57537 6.71789 7.36939 8.65448 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049847 B = 0.006568 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.585245 B = 4261.746526 C = 4475.679352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.132 4.132 7 C 0.136 3.864 8 O -0.571 6.571 9 C 0.036 3.964 10 N -0.674 5.674 11 C 0.196 3.804 12 C -0.612 4.612 13 H 0.059 0.941 14 C -0.038 4.038 15 N -0.936 5.936 16 Si 1.125 2.875 17 H -0.284 1.284 18 H -0.269 1.269 19 H -0.267 1.267 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.382 0.618 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.332 0.668 33 H -0.047 1.047 34 H -0.004 1.004 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 6.240 12.698 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.170 4.170 7 C 0.096 3.904 8 O -0.379 6.379 9 C -0.093 4.093 10 N -0.305 5.305 11 C 0.068 3.932 12 C -0.650 4.650 13 H 0.077 0.923 14 C -0.235 4.235 15 N -0.573 5.573 16 Si 0.945 3.055 17 H -0.209 1.209 18 H -0.194 1.194 19 H -0.192 1.192 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.150 0.850 33 H -0.030 1.030 34 H 0.014 0.986 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.300 5.192 12.269 15.191 hybrid contribution -0.222 1.404 0.174 1.433 sum 7.077 6.597 12.443 15.762 Atomic orbital electron populations 1.21970 0.94377 1.01997 1.02103 1.21719 0.95856 0.99950 0.92669 0.90120 1.22450 0.97315 0.99124 0.96200 1.22481 0.97889 1.00305 0.95008 1.22799 0.99396 0.97299 0.97489 1.22002 0.88476 0.89613 0.90339 1.86456 1.67793 1.42206 1.41421 1.22866 0.97700 0.94590 0.94160 1.60504 1.16056 1.39772 1.14207 1.19345 0.89950 0.92562 0.91355 1.22368 0.95773 1.33124 1.13731 0.92254 1.27529 0.94271 0.98813 1.02889 1.70932 1.13453 1.38760 1.34203 0.82840 0.74935 0.74948 0.72768 1.20912 1.19396 1.19190 0.92635 0.90361 0.93737 0.90856 0.89606 0.90306 0.91138 0.91902 0.91575 0.76932 0.96664 0.90855 0.85036 1.02985 0.98607 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 7.88 71.98 0.57 -2.96 16 2 C -0.08 -2.05 3.31 -10.06 -0.03 -2.09 16 3 H 0.08 2.02 7.96 -2.39 -0.02 2.01 16 4 C -0.11 -2.28 6.36 31.67 0.20 -2.07 16 5 C -0.12 -2.56 6.91 31.88 0.22 -2.34 16 6 C -0.13 -3.66 5.63 31.67 0.18 -3.48 16 7 C 0.14 4.03 1.13 -10.07 -0.01 4.02 16 8 O -0.57 -17.27 12.90 -148.98 -1.92 -19.19 16 9 C 0.04 1.32 3.57 86.30 0.31 1.63 16 10 N -0.67 -28.90 6.00 -517.95 -3.11 -32.01 16 11 C 0.20 10.57 4.75 85.56 0.41 10.98 16 12 C -0.61 -35.36 9.32 25.60 0.24 -35.12 16 13 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 14 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 15 N -0.94 -58.66 13.65 21.45 0.29 -58.37 16 16 Si 1.12 50.27 29.90 68.60 2.05 52.32 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 H 0.05 1.39 6.56 -2.39 -0.02 1.37 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.04 1.18 6.92 -2.39 -0.02 1.17 16 23 H 0.07 1.41 7.84 -2.39 -0.02 1.39 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.96 7.85 -2.39 -0.02 1.94 16 28 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 29 H 0.38 10.26 7.66 -74.06 -0.57 9.69 16 30 H 0.02 0.59 7.13 -2.39 -0.02 0.57 16 31 H 0.07 2.71 6.33 -2.39 -0.02 2.69 16 32 H 0.33 13.39 7.33 -89.69 -0.66 12.73 16 33 H -0.05 -2.73 8.01 -2.39 -0.02 -2.75 16 34 H 0.00 -0.24 8.01 -2.39 -0.02 -0.26 16 35 H 0.25 16.10 7.22 -92.71 -0.67 15.43 16 Total: -1.00 -66.05 275.33 -0.20 -66.25 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.05 Total: 24.17 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.54 Total: -33.17 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.82 Total: -90.37 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.92 Total: -19.19 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -66.05 -0.20 -66.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.592 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds