Wall clock time and date at job start Mon Mar 30 2020 04:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.05741 * 2 1 4 4 C 1.54264 * 110.03198 * 238.57988 * 2 1 3 5 5 C 1.54885 * 104.19537 * 217.10584 * 4 2 1 6 6 C 1.54893 * 102.74873 * 37.94482 * 5 4 2 7 7 C 1.53871 * 110.02812 * 121.41591 * 2 1 3 8 8 O 1.42903 * 110.07212 * 238.59124 * 7 2 1 9 9 C 1.53003 * 110.03753 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47305 * 178.62203 * 9 7 2 11 11 C 1.46904 * 111.00014 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47195 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 H 1.09004 * 109.47186 * 298.58903 * 1 2 3 21 21 H 1.09000 * 109.46996 * 58.58600 * 1 2 3 22 22 H 1.09000 * 109.47110 * 178.58521 * 1 2 3 23 23 H 1.08999 * 110.48437 * 98.42703 * 4 2 1 24 24 H 1.08999 * 110.59671 * 335.84234 * 4 2 1 25 25 H 1.08999 * 110.76012 * 279.62744 * 5 4 2 26 26 H 1.09006 * 110.75726 * 156.25464 * 5 4 2 27 27 H 1.09001 * 110.48590 * 203.37337 * 6 5 4 28 28 H 1.09003 * 110.48735 * 80.73715 * 6 5 4 29 29 H 0.96700 * 114.00200 * 180.72365 * 8 7 2 30 30 H 1.08999 * 109.46732 * 58.61983 * 9 7 2 31 31 H 1.09006 * 109.46812 * 298.62402 * 9 7 2 32 32 H 1.00903 * 111.00189 * 56.04859 * 10 9 7 33 33 H 1.09000 * 109.47038 * 59.99386 * 11 10 9 34 34 H 1.09007 * 109.46566 * 299.99918 * 11 10 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7535 1.2337 8 8 2.8822 0.1088 2.0196 9 6 0.8861 -1.2663 2.0745 10 7 1.4025 -2.0114 3.2304 11 6 0.3038 -2.5205 4.0621 12 6 0.8710 -3.2769 5.2357 13 1 1.9407 -3.3705 5.3518 14 6 0.0243 -3.8548 6.1576 15 7 -1.2783 -3.7412 6.0160 16 14 0.7272 -4.7991 7.6080 17 1 1.5797 -3.8949 8.4211 18 1 -0.3835 -5.3178 8.4461 19 1 1.5443 -5.9348 7.1102 20 1 -0.3634 0.4918 0.9024 21 1 -0.3633 0.5356 -0.8770 22 1 -0.3633 -1.0273 -0.0254 23 1 2.3297 -0.0537 -2.0254 24 1 1.3152 -1.4659 -1.5987 25 1 4.1710 -0.8291 -0.6751 26 1 3.5325 -2.3680 -1.3421 27 1 3.7637 -2.1038 1.3311 28 1 2.2771 -2.8426 0.6573 29 1 3.2540 -0.3125 2.8067 30 1 0.2633 -1.9234 1.4675 31 1 0.2915 -0.4217 2.4228 32 1 2.0345 -1.4429 3.7741 33 1 -0.3228 -3.1863 3.4686 34 1 -0.2951 -1.6847 4.4242 35 1 -1.8739 -4.1480 6.6645 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382202698.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:00 Heat of formation + Delta-G solvation = -92.589237 kcal Electronic energy + Delta-G solvation = -14777.919684 eV Core-core repulsion = 12387.873126 eV Total energy + Delta-G solvation = -2390.046558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73807 -36.77123 -35.92513 -34.39430 -32.38354 -30.32531 -28.04116 -25.90333 -24.86234 -23.41072 -21.79294 -19.86948 -18.72393 -17.57675 -17.13325 -16.52762 -16.41167 -15.78588 -15.08610 -14.63130 -14.57265 -14.05347 -13.75475 -13.69902 -13.23757 -13.05319 -12.75719 -12.61969 -12.40638 -12.28040 -12.09500 -11.84229 -11.59876 -11.49709 -11.39778 -11.09263 -10.73504 -10.64692 -9.17454 -8.24228 -6.36154 1.41028 1.44635 1.52660 2.38947 3.09199 3.22027 3.39578 3.64407 3.88108 3.90868 4.24765 4.43435 4.46515 4.49447 4.57715 4.65534 4.81340 4.88135 4.96618 5.03460 5.05590 5.08712 5.20025 5.23370 5.30161 5.34974 5.41200 5.53433 5.58841 5.98024 6.35630 6.63624 6.78978 6.85140 7.35037 8.87374 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050730 B = 0.006503 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.807815 B = 4304.952112 C = 4520.214378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.133 4.133 7 C 0.136 3.864 8 O -0.572 6.572 9 C 0.039 3.961 10 N -0.681 5.681 11 C 0.210 3.790 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.382 0.618 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.331 0.669 33 H 0.000 1.000 34 H -0.043 1.043 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.195 5.703 -12.562 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.171 4.171 7 C 0.096 3.904 8 O -0.380 6.380 9 C -0.091 4.091 10 N -0.312 5.312 11 C 0.083 3.917 12 C -0.575 4.575 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.063 0.937 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.231 0.769 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.148 0.852 33 H 0.018 0.982 34 H -0.025 1.025 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.933 5.495 -13.303 15.976 hybrid contribution -0.444 -0.095 1.912 1.965 sum 6.489 5.399 -11.391 14.178 Atomic orbital electron populations 1.21964 0.94388 1.02070 1.02015 1.21715 0.95853 0.99904 0.92750 0.90249 1.22443 0.97346 0.99126 0.96181 1.22480 0.97844 1.00275 0.95088 1.22824 0.99467 0.97349 0.97440 1.21999 0.88562 0.89561 0.90300 1.86445 1.67806 1.42258 1.41463 1.22807 0.97236 0.95568 0.93487 1.60579 1.19244 1.40390 1.11004 1.19179 0.88916 0.92552 0.91094 1.21520 0.93825 1.33960 1.08241 0.91438 1.25985 0.95047 0.97353 1.01392 1.70088 1.03633 1.45996 1.37819 0.85351 0.77820 0.78818 0.78092 1.19024 1.20848 1.19213 0.93723 0.90495 0.92586 0.89753 0.90809 0.91227 0.90307 0.91514 0.91802 0.76853 0.91148 0.96601 0.85155 0.98227 1.02538 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 7.89 71.98 0.57 -3.02 16 2 C -0.08 -2.08 3.31 -10.07 -0.03 -2.12 16 3 H 0.08 2.02 7.96 -2.39 -0.02 2.00 16 4 C -0.11 -2.29 6.36 31.67 0.20 -2.09 16 5 C -0.12 -2.56 6.91 31.88 0.22 -2.34 16 6 C -0.13 -3.67 5.76 31.67 0.18 -3.49 16 7 C 0.14 4.06 1.12 -10.07 -0.01 4.05 16 8 O -0.57 -17.46 12.86 -148.98 -1.92 -19.38 16 9 C 0.04 1.42 3.54 86.31 0.31 1.72 16 10 N -0.68 -29.13 6.13 -517.91 -3.17 -32.31 16 11 C 0.21 11.44 5.44 85.56 0.47 11.90 16 12 C -0.54 -30.74 9.32 25.60 0.24 -30.50 16 13 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 16 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H 0.04 1.21 6.78 -2.39 -0.02 1.20 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.42 6.68 -2.39 -0.02 1.40 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.42 7.84 -2.39 -0.02 1.40 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 28 H 0.06 1.95 7.85 -2.39 -0.02 1.93 16 29 H 0.38 10.41 7.49 -74.06 -0.55 9.86 16 30 H 0.07 2.63 6.65 -2.39 -0.02 2.62 16 31 H 0.02 0.62 6.82 -2.38 -0.02 0.60 16 32 H 0.33 13.23 7.16 -89.69 -0.64 12.59 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H -0.04 -2.54 8.14 -2.38 -0.02 -2.56 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -64.19 276.50 -0.31 -64.50 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.13 Total: 23.03 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 2.60 Total: -25.38 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.89 Total: -89.03 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.92 Total: -19.38 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.19 -0.31 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382202698.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.088 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds